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OPENSEQ.org
L16 - L23
UniProt: P60489 - Q5SHP0
Length: 237
Sequences: 1208
Seq/Len: 5.25
I_Prob: 0.18
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoHSContact Map
1vq81vq8HSContact Map
1vqp1vqpHSContact Map
1vqm1vqmHSContact Map
1vql1vqlHSContact Map
1vqk1vqkHSContact Map
1yhq1yhqHSContact Map
1s721s72HSContact Map
1vq91vq9HSContact Map
1vqn1vqnHSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_F 26_Y 1.16 0.18
52_V 37_T 1.05 0.13
22_K 55_N 1.03 0.12
27_V 67_G 0.97 0.10
69_F 13_L 0.92 0.09
66_I 81_V 0.88 0.07
102_V 19_A 0.84 0.06
24_G 13_L 0.82 0.06
71_D 56_T 0.82 0.06
38_E 91_A 0.80 0.06
130_K 80_I 0.79 0.05
123_H 10_A 0.77 0.05
1_M 11_P 0.76 0.05
41_W 26_Y 0.75 0.04
113_Q 64_K 0.74 0.04
104_F 25_K 0.74 0.04
29_F 95_L 0.73 0.04
44_A 5_Y 0.72 0.04
67_R 86_G 0.71 0.04
49_A 8_I 0.69 0.04
72_K 35_T 0.69 0.04
89_N 80_I 0.68 0.03
101_R 72_K 0.67 0.03
118_L 21_F 0.67 0.03
135_D 67_G 0.67 0.03
134_R 62_K 0.66 0.03
83_M 25_K 0.66 0.03
112_E 78_K 0.66 0.03
136_A 14_S 0.66 0.03
117_A 11_P 0.66 0.03
118_L 33_K 0.66 0.03
106_V 73_R 0.65 0.03
64_I 72_K 0.64 0.03
71_D 16_K 0.64 0.03
134_R 79_A 0.64 0.03
34_L 94_G 0.63 0.03
111_E 67_G 0.63 0.03
104_F 24_G 0.62 0.03
57_H 92_L 0.62 0.03
93_Y 8_I 0.62 0.03
21_T 29_W 0.61 0.03
104_F 22_A 0.61 0.02
106_V 57_L 0.60 0.02
3_M 58_H 0.60 0.02
89_N 82_Q 0.60 0.02
85_K 20_G 0.60 0.02
11_K 18_Y 0.60 0.02
31_D 25_K 0.59 0.02
95_A 87_Q 0.59 0.02
45_Q 18_Y 0.59 0.02
39_P 6_D 0.59 0.02
5_R 32_P 0.59 0.02
97_V 8_I 0.58 0.02
94_V 9_L 0.58 0.02
74_Y 39_I 0.58 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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