OPENSEQ.org
L16 - S10
UniProt: P60489 - Q5SHN7
Length: 246
Sequences: 800
Seq/Len: 3.38
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2dQ 3v2eJ 3v2fQContact Map
2j002j00J 2j01Q 2j02J 2j03QContact Map
4juw4juwJ 4juxQContact Map
4kix4kixM 4kiyJ 4kizM 4kj0J 4kj1M 4kj2J 4kj3M 4kj4JContact Map
4kj54kj5M 4kj6J 4kj7M 4kj8J 4kj9M 4kjaJ 4kjbM 4kjcJContact Map
3knh3knhJ 3kniQ 3knjJ 3knkQContact Map
3ohc3ohcJ 3ohdJ 3ohjQ 3ohkQContact Map
3uz63uz6M 3uz7M 3uz8P 3uz9PContact Map
3u5b3u5cU 3u5eI 3u5gU 3u5iIContact Map
3oge3ogeJ 3ogyJ 3oh5Q 3oh7QContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_Q 53_P 1.06 0.03
13_Q 25_E 1.05 0.02
36_A 10_G 1.02 0.02
5_R 62_H 1.00 0.02
64_I 82_I 0.97 0.02
74_Y 93_G 0.97 0.02
41_W 35_S 0.97 0.02
92_G 45_R 0.95 0.02
97_V 16_L 0.91 0.02
45_Q 55_K 0.91 0.02
45_Q 47_F 0.90 0.02
96_V 63_F 0.90 0.02
93_Y 54_F 0.88 0.01
80_E 95_E 0.87 0.01
137_Y 59_S 0.87 0.01
67_R 56_H 0.87 0.01
104_F 22_K 0.86 0.01
71_D 27_A 0.85 0.01
28_A 38_I 0.84 0.01
96_V 50_I 0.83 0.01
37_L 10_G 0.83 0.01
59_R 54_F 0.82 0.01
7_M 35_S 0.79 0.01
121_A 46_R 0.79 0.01
27_V 98_I 0.77 0.01
67_R 46_R 0.76 0.01
53_A 48_T 0.76 0.01
130_K 51_R 0.76 0.01
92_G 53_P 0.76 0.01
74_Y 56_H 0.75 0.01
138_D 38_I 0.74 0.01
20_A 65_L 0.74 0.01
137_Y 69_N 0.74 0.01
17_L 79_R 0.73 0.01
96_V 51_R 0.73 0.01
35_V 48_T 0.73 0.01
128_K 43_R 0.73 0.01
55_V 83_E 0.72 0.01
131_I 74_I 0.72 0.01
115_M 53_P 0.72 0.01
20_A 50_I 0.72 0.01
123_H 46_R 0.70 0.01
7_M 45_R 0.70 0.01
129_T 4_I 0.70 0.01
58_F 9_R 0.70 0.01
85_K 58_D 0.69 0.01
102_V 3_K 0.69 0.01
45_Q 56_H 0.69 0.01
43_T 38_I 0.69 0.01
103_M 10_G 0.68 0.01
29_F 49_V 0.68 0.01
67_R 52_G 0.68 0.01
73_P 38_I 0.68 0.01
56_R 60_R 0.68 0.01
79_L 51_R 0.67 0.01
138_D 43_R 0.67 0.01
78_P 45_R 0.67 0.01
106_V 96_I 0.67 0.01
120_I 89_D 0.67 0.01
76_K 16_L 0.66 0.01
79_L 97_E 0.66 0.01
115_M 21_Q 0.66 0.01
72_K 11_F 0.65 0.01
13_Q 95_E 0.65 0.01
102_V 33_Q 0.65 0.01
44_A 45_R 0.65 0.01
99_P 34_V 0.65 0.01
90_V 63_F 0.65 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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