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OPENSEQ.org
L16 - S13
UniProt: P60489 - P80377
Length: 267
Sequences: 1122
Seq/Len: 4.30
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dQ 3v2eM 3v2fQContact Map
2j002j00M 2j01Q 2j02M 2j03QContact Map
4juw4juwM 4juxQContact Map
4kix4kixM 4kiyM 4kizM 4kj0M 4kj1M 4kj2M 4kj3M 4kj4MContact Map
4kj54kj5M 4kj6M 4kj7M 4kj8M 4kj9M 4kjaM 4kjbM 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjQ 3ohkQContact Map
3knh3knhM 3kniQ 3knjM 3knkQContact Map
3uz63uz6P 3uz7P 3uz8P 3uz9PContact Map
3u5b3u5cS 3u5eI 3u5gS 3u5iIContact Map
3oge3ogeM 3ogyM 3oh5Q 3oh7QContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
64_I 73_E 0.99 0.02
50_A 94_R 0.92 0.01
11_K 105_T 0.91 0.01
121_A 20_T 0.91 0.01
110_T 115_K 0.91 0.01
58_F 73_E 0.88 0.01
101_R 11_R 0.87 0.01
112_E 49_T 0.86 0.01
106_V 46_K 0.86 0.01
22_K 104_R 0.84 0.01
94_V 30_A 0.83 0.01
104_F 84_I 0.81 0.01
83_M 31_K 0.80 0.01
110_T 58_E 0.78 0.01
85_K 83_D 0.78 0.01
138_D 38_G 0.76 0.01
23_G 115_K 0.73 0.01
85_K 12_N 0.73 0.01
52_V 111_K 0.73 0.01
9_Y 64_W 0.72 0.01
13_Q 102_R 0.72 0.01
96_V 77_N 0.71 0.01
42_I 58_E 0.71 0.01
92_G 39_I 0.71 0.01
130_K 37_T 0.70 0.01
54_M 117_V 0.70 0.01
137_Y 39_I 0.69 0.01
119_R 28_A 0.68 0.01
99_P 50_E 0.67 0.01
129_T 86_C 0.66 0.01
24_G 17_V 0.65 0.01
97_V 32_E 0.65 0.01
104_F 45_V 0.65 0.01
9_Y 55_R 0.65 0.01
54_M 116_T 0.65 0.01
17_L 63_T 0.64 0.01
45_Q 108_R 0.64 0.01
29_F 30_A 0.63 0.01
68_I 116_T 0.63 0.01
106_V 104_R 0.63 0.01
74_Y 77_N 0.62 0.01
16_R 56_L 0.62 0.01
101_R 75_A 0.62 0.01
68_I 25_I 0.62 0.01
93_Y 116_T 0.62 0.01
19_G 6_G 0.61 0.01
23_G 85_G 0.61 0.01
123_H 115_K 0.61 0.01
113_Q 56_L 0.61 0.01
132_V 95_G 0.61 0.01
3_M 50_E 0.61 0.01
77_K 94_R 0.61 0.01
74_Y 18_A 0.60 0.01
125_L 33_A 0.60 0.01
31_D 95_G 0.59 0.01
81_V 103_T 0.59 0.01
29_F 94_R 0.59 0.01
97_V 82_M 0.59 0.01
35_V 8_E 0.59 0.01
103_M 33_A 0.58 0.01
130_K 21_Y 0.58 0.01
76_K 74_V 0.58 0.01
85_K 72_A 0.58 0.01
83_M 103_T 0.58 0.01
118_L 9_I 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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