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OPENSEQ.org
L16 - S11
UniProt: P60489 - P80376
Length: 270
Sequences: 1004
Seq/Len: 3.79
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dQ 3v2eK 3v2fQContact Map
2j002j00K 2j01Q 2j02K 2j03QContact Map
4juw4juwK 4juxQContact Map
4kix4kixM 4kiyK 4kizM 4kj0K 4kj1M 4kj2K 4kj3M 4kj4KContact Map
4kj54kj5M 4kj6K 4kj7M 4kj8K 4kj9M 4kjaK 4kjbM 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjQ 3ohkQContact Map
3knh3knhK 3kniQ 3knjK 3knkQContact Map
3uz63uz6N 3uz7N 3uz8P 3uz9PContact Map
3oge3ogeK 3ogyK 3oh5Q 3oh7QContact Map
3uyd3uydN 3uyeP 3uyfN 3uygPContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
111_E 16_S 0.97 0.01
122_G 93_Q 0.97 0.01
100_G 119_C 0.97 0.01
27_V 67_D 0.93 0.01
104_F 104_Q 0.93 0.01
32_Y 67_D 0.89 0.01
73_P 103_L 0.88 0.01
81_V 79_S 0.86 0.01
55_V 20_Y 0.86 0.01
130_K 115_P 0.86 0.01
11_K 47_V 0.85 0.01
135_D 39_P 0.85 0.01
35_V 24_S 0.84 0.01
104_F 59_Y 0.84 0.01
137_Y 9_K 0.82 0.01
133_R 30_V 0.82 0.01
34_L 57_T 0.80 0.01
13_Q 3_K 0.80 0.01
106_V 54_R 0.79 0.01
101_R 94_A 0.79 0.01
36_A 93_Q 0.78 0.01
104_F 95_I 0.78 0.01
76_K 7_K 0.78 0.01
9_Y 127_K 0.78 0.01
60_R 53_S 0.77 0.01
91_E 58_P 0.76 0.01
42_I 15_A 0.76 0.01
66_I 52_G 0.76 0.01
23_G 77_M 0.75 0.01
53_A 113_P 0.75 0.01
133_R 78_Q 0.75 0.01
45_Q 74_A 0.74 0.01
110_T 15_A 0.74 0.01
76_K 82_V 0.74 0.01
61_G 11_K 0.74 0.01
106_V 71_K 0.74 0.01
110_T 18_R 0.74 0.01
18_K 70_K 0.73 0.01
43_T 29_I 0.73 0.01
58_F 43_S 0.72 0.01
67_R 48_I 0.72 0.01
38_E 89_A 0.71 0.01
67_R 15_A 0.71 0.01
59_R 12_R 0.70 0.01
67_R 18_R 0.70 0.01
50_A 80_V 0.70 0.01
85_K 67_D 0.69 0.00
21_T 89_A 0.69 0.00
32_Y 47_V 0.69 0.00
78_P 53_S 0.69 0.00
37_L 39_P 0.69 0.00
24_G 122_K 0.69 0.00
11_K 59_Y 0.68 0.00
110_T 9_K 0.68 0.00
77_K 48_I 0.68 0.00
20_A 63_L 0.68 0.00
97_V 124_K 0.68 0.00
129_T 97_A 0.67 0.00
14_R 53_S 0.67 0.00
80_E 119_C 0.67 0.00
11_K 122_K 0.67 0.00
137_Y 67_D 0.67 0.00
18_K 1_M 0.67 0.00
17_L 79_S 0.66 0.00
3_M 16_S 0.66 0.00
118_L 85_R 0.66 0.00
111_E 33_T 0.66 0.00
106_V 19_A 0.66 0.00
110_T 3_K 0.66 0.00
54_M 38_N 0.66 0.00
35_V 59_Y 0.65 0.00
18_K 3_K 0.65 0.00
18_K 10_V 0.65 0.00
13_Q 6_S 0.65 0.00
78_P 31_T 0.65 0.00
9_Y 101_S 0.65 0.00
99_P 125_F 0.64 0.00
72_K 125_F 0.64 0.00
18_K 109_V 0.64 0.00
67_R 79_S 0.64 0.00
109_V 11_K 0.64 0.00
50_A 56_G 0.64 0.00
96_V 98_L 0.64 0.00
42_I 5_P 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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