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OPENSEQ.org
L16 - S09
UniProt: P60489 - P80374
Length: 269
Sequences: 1133
Seq/Len: 4.29
I_Prob: 0.46
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dQ 3v2eI 3v2fQContact Map
2j002j00I 2j01Q 2j02I 2j03QContact Map
4juw4juwI 4juxQContact Map
4kix4kixM 4kiyI 4kizM 4kj0I 4kj1M 4kj2I 4kj3M 4kj4IContact Map
4kj54kj5M 4kj6I 4kj7M 4kj8I 4kj9M 4kjaI 4kjbM 4kjcIContact Map
3ohc3ohcI 3ohdI 3ohjQ 3ohkQContact Map
3knh3knhI 3kniQ 3knjI 3knkQContact Map
3uz63uz6L 3uz7L 3uz8P 3uz9PContact Map
3u5b3u5cQ 3u5eI 3u5gQ 3u5iIContact Map
3oge3ogeI 3ogyI 3oh5Q 3oh7QContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_R 126_S 1.30 0.46
41_W 109_V 0.92 0.16
120_I 46_A 0.87 0.13
39_P 37_F 0.86 0.13
89_N 97_K 0.83 0.11
111_E 123_P 0.81 0.11
91_E 109_V 0.81 0.11
110_T 35_E 0.80 0.10
6_R 35_E 0.78 0.09
85_K 109_V 0.78 0.09
28_A 30_G 0.77 0.09
23_G 12_E 0.76 0.09
35_V 79_L 0.76 0.09
62_G 9_R 0.74 0.08
26_Y 28_V 0.73 0.08
129_T 118_K 0.73 0.08
26_Y 27_T 0.71 0.07
74_Y 43_A 0.70 0.07
26_Y 59_F 0.70 0.07
36_A 93_R 0.69 0.06
72_K 13_A 0.69 0.06
85_K 106_A 0.68 0.06
90_V 91_D 0.67 0.06
11_K 70_K 0.67 0.06
95_A 83_R 0.66 0.06
29_F 28_V 0.66 0.06
74_Y 37_F 0.65 0.05
23_G 61_A 0.65 0.05
96_V 114_Y 0.65 0.05
27_V 35_E 0.64 0.05
121_A 61_A 0.64 0.05
35_V 82_A 0.64 0.05
137_Y 118_K 0.63 0.05
112_E 35_E 0.63 0.05
68_I 83_R 0.63 0.05
7_M 7_T 0.63 0.05
5_R 42_R 0.63 0.05
75_T 3_Q 0.62 0.05
133_R 65_V 0.62 0.05
33_G 117_H 0.62 0.05
101_R 14_V 0.62 0.05
35_V 18_F 0.62 0.04
39_P 121_R 0.62 0.04
130_K 83_R 0.62 0.04
136_A 90_P 0.62 0.04
31_D 23_N 0.61 0.04
29_F 82_A 0.61 0.04
119_R 54_D 0.61 0.04
7_M 53_V 0.61 0.04
131_I 3_Q 0.61 0.04
60_R 89_N 0.61 0.04
25_D 121_R 0.61 0.04
37_L 81_I 0.61 0.04
85_K 112_K 0.61 0.04
38_E 35_E 0.61 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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