May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L16 - S03
UniProt: P60489 - P80372
Length: 380
Sequences: 1119
Seq/Len: 3.21
I_Prob: 0.41
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dQ 3v2eC 3v2fQContact Map
2j002j00C 2j01Q 2j02C 2j03QContact Map
4juw4juwC 4juxQContact Map
4kix4kixM 4kiyC 4kizM 4kj0C 4kj1M 4kj2C 4kj3M 4kj4CContact Map
4kj54kj5M 4kj6C 4kj7M 4kj8C 4kj9M 4kjaC 4kjbM 4kjcCContact Map
3ohc3ohcC 3ohdC 3ohjQ 3ohkQContact Map
3knh3knhC 3kniQ 3knjC 3knkQContact Map
3uz63uz6F 3uz7F 3uz8P 3uz9PContact Map
3u5b3u5cD 3u5eI 3u5gD 3u5iIContact Map
3oge3ogeC 3ogyC 3oh5Q 3oh7QContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_N 165_T 1.34 0.41
89_N 161_E 1.16 0.27
135_D 151_V 1.05 0.20
85_K 203_F 1.02 0.18
103_M 129_A 0.97 0.15
57_H 120_V 0.96 0.15
103_M 188_L 0.94 0.14
67_R 167_W 0.93 0.13
71_D 172_R 0.93 0.13
45_Q 176_H 0.92 0.12
52_V 83_R 0.91 0.12
101_R 3_N 0.90 0.12
34_L 208_I 0.87 0.10
29_F 173_V 0.86 0.10
118_L 108_N 0.84 0.09
94_V 43_L 0.83 0.09
23_G 173_V 0.83 0.09
85_K 80_G 0.83 0.09
5_R 16_R 0.81 0.08
18_K 6_H 0.80 0.08
33_G 111_L 0.80 0.08
85_K 38_R 0.79 0.07
75_T 147_K 0.78 0.07
73_P 203_F 0.77 0.07
119_R 125_E 0.77 0.07
121_A 40_R 0.77 0.07
130_K 106_V 0.77 0.07
130_K 39_I 0.77 0.07
79_L 10_F 0.75 0.06
33_G 163_A 0.75 0.06
5_R 13_G 0.73 0.06
18_K 200_A 0.73 0.06
13_Q 19_E 0.72 0.06
122_G 87_L 0.72 0.05
60_R 176_H 0.72 0.05
71_D 167_W 0.71 0.05
113_Q 138_V 0.71 0.05
28_A 91_L 0.71 0.05
93_Y 160_A 0.71 0.05
107_A 66_V 0.71 0.05
129_T 83_R 0.71 0.05
95_A 74_G 0.71 0.05
16_R 43_L 0.71 0.05
23_G 92_A 0.71 0.05
44_A 25_G 0.70 0.05
74_Y 88_R 0.70 0.05
90_V 151_V 0.70 0.05
77_K 158_G 0.69 0.05
19_G 160_A 0.69 0.05
127_I 43_L 0.69 0.05
28_A 52_L 0.69 0.05
72_K 16_R 0.69 0.05
80_E 110_N 0.69 0.05
45_Q 29_Y 0.69 0.05
65_F 204_L 0.68 0.05
135_D 23_Y 0.68 0.05
80_E 32_L 0.68 0.05
72_K 79_R 0.68 0.05
102_V 64_V 0.68 0.05
68_I 124_I 0.68 0.05
134_R 123_Q 0.68 0.05
106_V 86_V 0.68 0.05
67_R 172_R 0.68 0.04
78_P 161_E 0.68 0.04
135_D 21_R 0.68 0.04
131_I 168_A 0.68 0.04
31_D 12_L 0.68 0.04
97_V 15_T 0.67 0.04
97_V 10_F 0.67 0.04
78_P 117_A 0.67 0.04
14_R 98_N 0.67 0.04
44_A 107_Q 0.67 0.04
67_R 8_I 0.66 0.04
27_V 195_V 0.66 0.04
137_Y 86_V 0.66 0.04
25_D 56_D 0.66 0.04
91_E 3_N 0.66 0.04
72_K 101_L 0.66 0.04
29_F 176_H 0.65 0.04
38_E 23_Y 0.65 0.04
102_V 137_A 0.65 0.04
102_V 83_R 0.65 0.04
63_K 123_Q 0.65 0.04
23_G 90_E 0.65 0.04
116_E 74_G 0.65 0.04
83_M 138_V 0.64 0.04
89_N 121_A 0.64 0.04
126_P 103_V 0.64 0.04
11_K 167_W 0.64 0.04
129_T 20_S 0.64 0.04
101_R 103_V 0.64 0.04
66_I 189_A 0.64 0.04
89_N 32_L 0.64 0.04
79_L 158_G 0.64 0.04
9_Y 196_L 0.64 0.04
20_A 151_V 0.64 0.04
42_I 110_N 0.64 0.04
6_R 9_G 0.64 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1926 seconds.