May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L16 - L27
UniProt: P60489 - P60493
Length: 226
Sequences: 1063
Seq/Len: 4.79
I_Prob: 0.60
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dQ0 3v2fQ0Contact Map
2j002j01Q0 2j03Q0Contact Map
4juw4juxQ0Contact Map
4kix4kixMW 4kizMW 4kj1MW 4kj3MWContact Map
4kj54kj5MW 4kj7MW 4kj9MW 4kjbMWContact Map
2zjr2zjrJTContact Map
4btc4btdQ0Contact Map
3uyd3uyeP3 3uygP3Contact Map
4gd13r8sMW 3r8tMWContact Map
3ohc3ohjQ0 3ohkQ0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_R 1_M 1.35 0.60
81_V 3_H 0.93 0.22
81_V 59_L 0.89 0.19
85_K 7_L 0.86 0.17
85_K 3_H 0.78 0.13
104_F 41_R 0.78 0.13
119_R 49_K 0.77 0.12
104_F 6_G 0.77 0.12
107_A 6_G 0.77 0.12
77_K 7_L 0.76 0.11
45_Q 27_E 0.75 0.11
42_I 32_R 0.74 0.10
106_V 78_Y 0.73 0.10
100_G 4_K 0.72 0.10
22_K 47_P 0.72 0.10
35_V 75_L 0.72 0.10
53_A 28_G 0.72 0.10
85_K 78_Y 0.71 0.09
121_A 6_G 0.69 0.08
80_E 11_R 0.68 0.08
61_G 29_Q 0.68 0.08
89_N 2_A 0.66 0.07
13_Q 10_T 0.66 0.07
27_V 49_K 0.66 0.07
72_K 19_K 0.65 0.07
73_P 38_V 0.64 0.07
123_H 37_L 0.64 0.07
110_T 83_P 0.64 0.07
5_R 84_L 0.63 0.06
127_I 74_R 0.63 0.06
44_A 35_N 0.63 0.06
115_M 30_V 0.61 0.06
130_K 45_F 0.60 0.06
27_V 32_R 0.60 0.05
18_K 19_K 0.59 0.05
104_F 21_L 0.59 0.05
77_K 10_T 0.59 0.05
89_N 62_L 0.58 0.05
122_G 30_V 0.57 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3286 seconds.