May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L13 - S18
UniProt: P60488 - Q5SLQ0
Length: 228
Sequences: 1107
Seq/Len: 5.32
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cR 3v2dN 3v2eR 3v2fNContact Map
2j002j00R 2j01N 2j02R 2j03NContact Map
4juw4juwR 4juxNContact Map
4kix4kixJ 4kiyR 4kizJ 4kj0R 4kj1J 4kj2R 4kj3J 4kj4RContact Map
4kj54kj5J 4kj6R 4kj7J 4kj8R 4kj9J 4kjaR 4kjbJ 4kjcRContact Map
3ohc3ohcR 3ohdR 3ohjN 3ohkNContact Map
3knh3knhR 3kniN 3knjR 3knkNContact Map
3uz63uz6U 3uz7U 3uz8M 3uz9MContact Map
3oge3ogeR 3ogyR 3oh5N 3oh7NContact Map
3uyd3uydU 3uyeM 3uyfU 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
57_A 48_G 1.09 0.08
83_K 61_K 0.91 0.05
16_I 66_L 0.89 0.04
74_R 58_L 0.78 0.03
68_E 81_F 0.78 0.03
14_V 39_V 0.73 0.03
89_K 68_K 0.70 0.02
1_M 76_L 0.68 0.02
77_G 32_R 0.68 0.02
33_L 53_R 0.64 0.02
72_Y 52_P 0.63 0.02
91_L 38_E 0.62 0.02
81_G 21_K 0.62 0.02
1_M 38_E 0.61 0.02
52_V 53_R 0.61 0.02
137_K 37_V 0.61 0.01
52_V 66_L 0.60 0.01
103_V 76_L 0.60 0.01
116_L 81_F 0.58 0.01
75_Y 50_I 0.58 0.01
83_K 53_R 0.57 0.01
111_P 66_L 0.57 0.01
96_E 67_A 0.57 0.01
47_A 77_G 0.56 0.01
45_N 56_T 0.56 0.01
85_I 39_V 0.56 0.01
98_V 82_T 0.56 0.01
16_I 21_K 0.56 0.01
4_Y 52_P 0.56 0.01
28_T 75_I 0.55 0.01
132_A 46_E 0.55 0.01
30_I 38_E 0.55 0.01
30_I 76_L 0.55 0.01
104_K 38_E 0.55 0.01
121_K 17_S 0.53 0.01
129_P 58_L 0.53 0.01
65_K 73_A 0.53 0.01
2_K 20_A 0.53 0.01
38_H 80_P 0.53 0.01
55_V 52_P 0.52 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.128 seconds.