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OPENSEQ.org

L13 - S06
UniProt: P60488 - Q5SLP8
Length: 241
Sequences: 1189
Seq/Len: 4.97
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dN 3v2eF 3v2fNContact Map
2j002j00F 2j01N 2j02F 2j03NContact Map
4juw4juwF 4juxNContact Map
4kix4kixJ 4kiyF 4kizJ 4kj0F 4kj1J 4kj2F 4kj3J 4kj4FContact Map
4kj54kj5J 4kj6F 4kj7J 4kj8F 4kj9J 4kjaF 4kjbJ 4kjcFContact Map
3ohc3ohcF 3ohdF 3ohjN 3ohkNContact Map
3knh3knhF 3kniN 3knjF 3knkNContact Map
3uz63uz6I 3uz7I 3uz8M 3uz9MContact Map
3oge3ogeF 3ogyF 3oh5N 3oh7NContact Map
3uyd3uydI 3uyeM 3uyfI 3uygMContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_R 80_R 0.90 0.01
51_F 8_I 0.83 0.01
122_V 34_G 0.76 0.00
34_L 43_L 0.74 0.00
123_Y 80_R 0.72 0.00
63_T 95_E 0.71 0.00
60_I 32_N 0.70 0.00
58_D 70_D 0.68 0.00
102_A 17_S 0.67 0.00
118_K 61_L 0.67 0.00
75_Y 36_R 0.67 0.00
76_S 69_E 0.66 0.00
100_E 78_E 0.65 0.00
52_V 67_M 0.64 0.00
111_P 41_E 0.64 0.00
76_S 36_R 0.64 0.00
86_P 61_L 0.63 0.00
131_Q 30_L 0.61 0.00
137_K 2_R 0.61 0.00
93_T 3_R 0.60 0.00
40_P 72_V 0.60 0.00
54_V 70_D 0.60 0.00
115_R 25_I 0.60 0.00
25_R 87_R 0.60 0.00
22_T 9_V 0.59 0.00
103_V 69_E 0.59 0.00
105_G 72_V 0.59 0.00
126_P 86_R 0.59 0.00
63_T 20_A 0.59 0.00
81_G 31_E 0.59 0.00
90_M 55_D 0.59 0.00
77_G 62_W 0.58 0.00
137_K 32_N 0.58 0.00
129_P 9_V 0.58 0.00
76_S 68_P 0.58 0.00
83_K 93_S 0.57 0.00
53_V 15_D 0.57 0.00
87_L 79_L 0.57 0.00
76_S 7_N 0.57 0.00
53_V 20_A 0.57 0.00
98_V 10_L 0.57 0.00
83_K 31_E 0.57 0.00
42_W 68_P 0.56 0.00
77_G 1_M 0.56 0.00
119_R 45_L 0.55 0.00
105_G 6_V 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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