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OPENSEQ.org
L13 - L35
UniProt: P60488 - Q5SKU1
Length: 205
Sequences: 1171
Seq/Len: 5.74
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dN8 3v2fN8Contact Map
2j002j01N8 2j03N8Contact Map
4juw4juxN8Contact Map
4kix4kixJ3 4kizJ3 4kj1J3 4kj3J3Contact Map
4kj54kj5J3 4kj7J3 4kj9J3 4kjbJ3Contact Map
2zjr2zjrG3Contact Map
4btc4btdN8Contact Map
3uyd3uyeM8 3uygM8Contact Map
4gd13r8sJ3 3r8tJ3Contact Map
3ohc3ohjN8 3ohkN8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
38_H 9_G 0.85 0.00
119_R 14_V 0.79 0.00
19_E 6_T 0.78 0.00
109_K 34_W 0.77 0.00
86_P 62_L 0.75 0.00
83_K 45_G 0.72 0.00
52_V 19_S 0.69 0.00
63_T 11_K 0.64 0.00
109_K 62_L 0.64 0.00
134_R 9_G 0.63 0.00
94_H 8_K 0.63 0.00
6_P 4_M 0.62 0.00
27_A 63_P 0.62 0.00
77_G 59_K 0.62 0.00
29_K 61_L 0.61 0.00
11_P 57_R 0.60 0.00
34_L 12_K 0.60 0.00
129_P 15_K 0.60 0.00
42_W 52_K 0.59 0.00
52_V 20_G 0.59 0.00
19_E 22_V 0.59 0.00
63_T 41_I 0.57 0.00
73_T 56_E 0.56 0.00
28_T 19_S 0.56 0.00
3_T 2_P 0.56 0.00
104_K 43_Q 0.54 0.00
87_L 38_G 0.54 0.00
52_V 57_R 0.54 0.00
60_I 17_T 0.54 0.00
45_N 63_P 0.53 0.00
139_E 14_V 0.53 0.00
124_A 4_M 0.52 0.00
51_F 28_G 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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