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OPENSEQ.org

L13 - S16
UniProt: P60488 - Q5SJH3
Length: 228
Sequences: 1427
Seq/Len: 6.34
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dN 3v2eP 3v2fNContact Map
2j002j00P 2j01N 2j02P 2j03NContact Map
4juw4juwP 4juxNContact Map
4kix4kixJ 4kiyP 4kizJ 4kj0P 4kj1J 4kj2P 4kj3J 4kj4PContact Map
4kj54kj5J 4kj6P 4kj7J 4kj8P 4kj9J 4kjaP 4kjbJ 4kjcPContact Map
3knh3knhP 3kniN 3knjP 3knkNContact Map
3ohc3ohcP 3ohdP 3ohjN 3ohkNContact Map
3uz63uz6S 3uz7S 3uz8M 3uz9MContact Map
3oge3ogeP 3ogyP 3oh5N 3oh7NContact Map
3uyd3uydS 3uyeM 3uyfS 3uygMContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
57_A 68_D 0.69 0.00
16_I 66_P 0.64 0.00
123_Y 31_K 0.62 0.00
121_K 38_Y 0.59 0.00
69_Q 19_I 0.59 0.00
139_E 54_E 0.59 0.00
42_W 25_R 0.57 0.00
114_R 21_V 0.56 0.00
15_L 61_S 0.56 0.00
20_G 27_K 0.55 0.00
53_V 78_G 0.55 0.00
87_L 7_A 0.54 0.00
61_R 3_K 0.54 0.00
103_V 55_R 0.53 0.00
93_T 3_K 0.53 0.00
16_I 74_L 0.53 0.00
101_H 18_R 0.52 0.00
87_L 35_K 0.52 0.00
91_L 27_K 0.52 0.00
60_I 53_V 0.51 0.00
123_Y 39_Y 0.51 0.00
76_S 18_R 0.51 0.00
23_L 82_Q 0.51 0.00
53_V 58_Y 0.51 0.00
121_K 55_R 0.50 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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