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OPENSEQ.org
L13 - S15
UniProt: P60488 - Q5SJ76
Length: 229
Sequences: 1342
Seq/Len: 5.86
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dN 3v2eO 3v2fNContact Map
2j002j00O 2j01N 2j02O 2j03NContact Map
4juw4juwO 4juxNContact Map
4kix4kixJ 4kiyO 4kizJ 4kj0O 4kj1J 4kj2O 4kj3J 4kj4OContact Map
4kj54kj5J 4kj6O 4kj7J 4kj8O 4kj9J 4kjaO 4kjbJ 4kjcOContact Map
3knh3knhO 3kniN 3knjO 3knkNContact Map
3ohc3ohcO 3ohdO 3ohjN 3ohkNContact Map
3uz63uz6R 3uz7R 3uz8M 3uz9MContact Map
3oge3ogeO 3ogyO 3oh5N 3oh7NContact Map
3uyd3uydR 3uyeM 3uyfR 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
14_V 18_F 0.79 0.00
63_T 41_E 0.78 0.00
103_V 17_R 0.74 0.00
103_V 31_L 0.70 0.00
63_T 29_V 0.68 0.00
140_V 89_G 0.67 0.00
109_K 50_H 0.67 0.00
84_K 81_L 0.66 0.00
8_Q 46_H 0.66 0.00
110_G 18_F 0.65 0.00
8_Q 40_S 0.61 0.00
51_F 18_F 0.60 0.00
75_Y 51_H 0.59 0.00
7_K 73_E 0.58 0.00
1_M 35_R 0.58 0.00
97_R 8_K 0.58 0.00
19_E 15_F 0.57 0.00
134_R 5_K 0.57 0.00
116_L 59_M 0.57 0.00
7_K 16_A 0.56 0.00
129_P 38_R 0.56 0.00
41_D 62_Q 0.55 0.00
16_I 51_H 0.54 0.00
62_V 12_I 0.54 0.00
22_T 60_V 0.54 0.00
76_S 47_K 0.54 0.00
46_V 62_Q 0.53 0.00
90_M 20_G 0.53 0.00
97_R 89_G 0.53 0.00
29_K 58_M 0.53 0.00
21_K 89_G 0.53 0.00
120_L 8_K 0.53 0.00
129_P 25_T 0.52 0.00
72_Y 58_M 0.52 0.00
42_W 37_N 0.51 0.00
105_G 3_I 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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