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OPENSEQ.org
L13 - L25
UniProt: P60488 - Q5SHZ1
Length: 346
Sequences: 1215
Seq/Len: 3.75
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dNZ 3v2fNZContact Map
2j002j01NZ 2j03NZContact Map
4juw4juxNZContact Map
4kix4kixJV 4kizJV 4kj1JV 4kj3JVContact Map
4kj54kj5JV 4kj7JV 4kj9JV 4kjbJVContact Map
2zjr2zjrGSContact Map
4btc4btdNZContact Map
3uyd3uyeMV 3uygMVContact Map
4gd13r8sJV 3r8tJVContact Map
3ohc3ohjNZ 3ohkNZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
47_A 30_N 0.96 0.01
3_T 10_R 0.85 0.01
129_P 106_G 0.77 0.01
110_G 88_F 0.77 0.01
16_I 174_V 0.74 0.00
76_S 90_V 0.73 0.00
26_L 98_M 0.71 0.00
54_V 62_P 0.71 0.00
63_T 70_L 0.71 0.00
55_V 118_Q 0.69 0.00
41_D 54_H 0.69 0.00
42_W 82_R 0.68 0.00
88_E 159_P 0.68 0.00
53_V 2_E 0.67 0.00
130_H 100_V 0.66 0.00
104_K 80_R 0.66 0.00
63_T 73_Q 0.66 0.00
134_R 137_I 0.65 0.00
40_P 83_P 0.65 0.00
71_I 44_F 0.65 0.00
102_A 160_G 0.65 0.00
65_K 98_M 0.64 0.00
52_V 33_L 0.64 0.00
104_K 111_V 0.64 0.00
53_V 130_P 0.64 0.00
120_L 177_P 0.64 0.00
58_D 58_V 0.64 0.00
16_I 100_V 0.63 0.00
42_W 41_L 0.63 0.00
79_P 99_Y 0.63 0.00
54_V 82_R 0.63 0.00
107_L 57_I 0.63 0.00
54_V 65_Q 0.62 0.00
11_P 94_E 0.62 0.00
53_V 119_E 0.62 0.00
8_Q 92_S 0.62 0.00
75_Y 131_R 0.62 0.00
60_I 24_L 0.62 0.00
100_E 103_R 0.62 0.00
42_W 159_P 0.62 0.00
70_K 32_H 0.61 0.00
42_W 109_A 0.61 0.00
111_P 141_V 0.61 0.00
104_K 57_I 0.61 0.00
65_K 74_V 0.60 0.00
2_K 131_R 0.60 0.00
113_G 88_F 0.60 0.00
60_I 139_V 0.60 0.00
57_A 150_L 0.59 0.00
60_I 166_S 0.59 0.00
94_H 174_V 0.59 0.00
79_P 172_A 0.58 0.00
28_T 82_R 0.58 0.00
23_L 132_N 0.58 0.00
30_I 151_H 0.58 0.00
5_V 128_V 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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