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OPENSEQ.org

L13 - L36
UniProt: P60488 - Q5SHR2
Length: 177
Sequences: 864
Seq/Len: 4.88
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dN9 3v2fN9Contact Map
2j002j01N9 2j03N9Contact Map
4juw4juxN9Contact Map
4kix4kixJ4 4kizJ4 4kj1J4 4kj3J4Contact Map
4kj54kj5J4 4kj7J4 4kj9J4 4kjbJ4Contact Map
2zjr2zjrG4Contact Map
4btc4btdN9Contact Map
4gd13r8sJ4 3r8tJ4Contact Map
3knh3kniN9 3knkN9Contact Map
3v223v23N9 3v25N9Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
138_L 22_R 0.92 0.01
72_Y 31_K 0.89 0.01
129_P 18_R 0.81 0.01
2_K 5_A 0.68 0.00
73_T 32_H 0.68 0.00
5_V 5_A 0.67 0.00
42_W 23_V 0.66 0.00
32_T 25_V 0.66 0.00
111_P 12_D 0.64 0.00
71_I 31_K 0.64 0.00
114_R 12_D 0.63 0.00
84_K 15_K 0.63 0.00
121_K 22_R 0.63 0.00
42_W 2_K 0.62 0.00
19_E 23_V 0.62 0.00
115_R 35_R 0.61 0.00
15_L 10_I 0.61 0.00
137_K 31_K 0.59 0.00
21_K 22_R 0.57 0.00
82_L 27_C 0.57 0.00
46_V 10_I 0.57 0.00
73_T 24_Y 0.56 0.00
9_V 18_R 0.56 0.00
121_K 27_C 0.56 0.00
57_A 21_G 0.56 0.00
16_I 18_R 0.55 0.00
79_P 10_I 0.55 0.00
10_E 29_N 0.54 0.00
31_A 21_G 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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