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OPENSEQ.org
L13 - S08
UniProt: P60488 - Q5SHQ2
Length: 278
Sequences: 1575
Seq/Len: 5.83
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dN 3v2eH 3v2fNContact Map
2j002j00H 2j01N 2j02H 2j03NContact Map
4juw4juwH 4juxNContact Map
4kix4kixJ 4kiyH 4kizJ 4kj0H 4kj1J 4kj2H 4kj3J 4kj4HContact Map
4kj54kj5J 4kj6H 4kj7J 4kj8H 4kj9J 4kjaH 4kjbJ 4kjcHContact Map
3ohc3ohcH 3ohdH 3ohjN 3ohkNContact Map
3knh3knhH 3kniN 3knjH 3knkNContact Map
3uz63uz6K 3uz7K 3uz8M 3uz9MContact Map
3u5b3u5cW 3u5eO 3u5gW 3u5iOContact Map
3oge3ogeH 3ogyH 3oh5N 3oh7NContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
121_K 135_C 0.94 0.01
116_L 135_C 0.75 0.01
62_V 3_T 0.74 0.01
11_P 102_R 0.74 0.01
129_P 16_A 0.71 0.01
52_V 17_T 0.69 0.01
119_R 105_R 0.67 0.01
117_F 112_L 0.67 0.01
140_V 20_Y 0.65 0.01
65_K 16_A 0.65 0.01
1_M 86_I 0.65 0.01
55_V 38_I 0.64 0.01
89_K 107_L 0.62 0.01
28_T 48_Y 0.62 0.01
98_V 105_R 0.62 0.01
78_Y 44_F 0.62 0.00
48_M 100_I 0.61 0.00
98_V 118_V 0.59 0.00
5_V 96_G 0.59 0.00
6_P 76_P 0.58 0.00
128_H 12_R 0.58 0.00
116_L 86_I 0.58 0.00
46_V 104_R 0.57 0.00
139_E 32_K 0.57 0.00
53_V 10_L 0.57 0.00
78_Y 24_T 0.56 0.00
97_R 59_L 0.56 0.00
100_E 61_V 0.56 0.00
2_K 48_Y 0.56 0.00
137_K 134_I 0.55 0.00
18_A 120_T 0.55 0.00
62_V 34_E 0.55 0.00
7_K 2_L 0.55 0.00
124_A 86_I 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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