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OPENSEQ.org
L13 - S14
UniProt: P60488 - Q5SHQ1
Length: 201
Sequences: 1205
Seq/Len: 6.00
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cN 3v2dN 3v2eN 3v2fNContact Map
2j002j00N 2j01N 2j02N 2j03NContact Map
4juw4juwN 4juxNContact Map
3ohc3ohcN 3ohdN 3ohjN 3ohkNContact Map
3knh3knhN 3kniN 3knjN 3knkNContact Map
3uz63uz6Q 3uz7Q 3uz8M 3uz9MContact Map
3u5b3u5cd 3u5eO 3u5gd 3u5iOContact Map
3oge3ogeN 3ogyN 3oh5N 3oh7NContact Map
3uyd3uydQ 3uyeM 3uyfQ 3uygMContact Map
3f1e3f1eN 3f1fN 3f1gN 3f1hNContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
129_P 57_R 0.85 0.00
115_R 31_R 0.76 0.00
4_Y 53_L 0.73 0.00
43_T 59_A 0.66 0.00
140_V 39_L 0.64 0.00
22_T 36_F 0.63 0.00
129_P 31_R 0.60 0.00
67_L 44_L 0.60 0.00
103_V 7_I 0.59 0.00
16_I 18_V 0.59 0.00
46_V 59_A 0.56 0.00
58_D 39_L 0.55 0.00
28_T 57_R 0.55 0.00
88_E 44_L 0.54 0.00
76_S 53_L 0.52 0.00
31_A 51_G 0.51 0.00
15_L 27_C 0.51 0.00
79_P 12_R 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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