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OPENSEQ.org
L13 - L14
UniProt: P60488 - Q5SHP8
Length: 262
Sequences: 1375
Seq/Len: 5.25
I_Prob: 0.05
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoJKContact Map
1vq81vq8JKContact Map
1vqp1vqpJKContact Map
1vqm1vqmJKContact Map
1vql1vqlJKContact Map
1vqk1vqkJKContact Map
1yhq1yhqJKContact Map
1s721s72JKContact Map
1vq91vq9JKContact Map
1vqn1vqnJKContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
45_N 54_E 1.05 0.05
83_K 14_T 0.80 0.02
28_T 65_T 0.79 0.02
84_K 72_P 0.76 0.02
79_P 77_I 0.73 0.02
129_P 93_P 0.73 0.02
137_K 56_D 0.70 0.02
98_V 14_T 0.70 0.02
105_G 5_Q 0.69 0.02
69_Q 87_I 0.68 0.01
40_P 43_V 0.67 0.01
30_I 45_E 0.67 0.01
45_N 112_M 0.66 0.01
91_L 14_T 0.64 0.01
110_G 73_D 0.63 0.01
2_K 62_V 0.62 0.01
88_E 89_N 0.62 0.01
91_L 67_K 0.62 0.01
67_L 17_R 0.62 0.01
107_L 69_I 0.61 0.01
139_E 35_V 0.61 0.01
137_K 38_V 0.61 0.01
8_Q 31_K 0.60 0.01
2_K 29_N 0.60 0.01
69_Q 14_T 0.59 0.01
39_R 86_I 0.59 0.01
92_A 76_A 0.58 0.01
91_L 92_E 0.58 0.01
109_K 115_V 0.58 0.01
139_E 72_P 0.58 0.01
2_K 67_K 0.58 0.01
32_T 29_N 0.58 0.01
23_L 39_I 0.58 0.01
42_W 112_M 0.57 0.01
91_L 109_K 0.57 0.01
9_V 17_R 0.57 0.01
63_T 78_R 0.56 0.01
138_L 88_N 0.56 0.01
82_L 45_E 0.56 0.01
72_Y 110_G 0.56 0.01
118_K 87_I 0.56 0.01
105_G 119_P 0.55 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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