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OPENSEQ.org
L13 - S17
UniProt: P60488 - Q5SHP7
Length: 245
Sequences: 1514
Seq/Len: 6.85
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cQ 3v2dN 3v2eQ 3v2fNContact Map
2j002j00Q 2j01N 2j02Q 2j03NContact Map
4juw4juwQ 4juxNContact Map
4kix4kixJ 4kiyQ 4kizJ 4kj0Q 4kj1J 4kj2Q 4kj3J 4kj4QContact Map
4kj54kj5J 4kj6Q 4kj7J 4kj8Q 4kj9J 4kjaQ 4kjbJ 4kjcQContact Map
3ohc3ohcQ 3ohdQ 3ohjN 3ohkNContact Map
3knh3knhQ 3kniN 3knjQ 3knkNContact Map
3uz63uz6T 3uz7T 3uz8M 3uz9MContact Map
3oge3ogeQ 3ogyQ 3oh5N 3oh7NContact Map
3uyd3uydT 3uyeM 3uyfT 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
110_G 65_I 0.72 0.00
103_V 6_L 0.70 0.00
82_L 25_R 0.65 0.00
33_L 4_K 0.62 0.00
14_V 5_V 0.61 0.00
6_P 67_K 0.59 0.00
1_M 71_F 0.59 0.00
92_A 9_V 0.58 0.00
29_K 24_E 0.57 0.00
2_K 67_K 0.56 0.00
58_D 75_R 0.56 0.00
140_V 78_E 0.54 0.00
3_T 68_R 0.53 0.00
26_L 31_L 0.53 0.00
65_K 7_T 0.53 0.00
139_E 81_R 0.52 0.00
8_Q 44_A 0.52 0.00
129_P 26_Q 0.52 0.00
139_E 31_L 0.52 0.00
93_T 31_L 0.51 0.00
83_K 81_R 0.51 0.00
11_P 51_Y 0.51 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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