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OPENSEQ.org
L13 - L23
UniProt: P60488 - Q5SHP0
Length: 236
Sequences: 1534
Seq/Len: 6.61
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoJSContact Map
1vq81vq8JSContact Map
1vqp1vqpJSContact Map
1vqm1vqmJSContact Map
1vql1vqlJSContact Map
1vqk1vqkJSContact Map
1yhq1yhqJSContact Map
1s721s72JSContact Map
1vq91vq9JSContact Map
1vqn1vqnJSContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
23_L 47_F 0.96 0.02
85_I 91_A 0.74 0.01
99_L 76_R 0.70 0.01
8_Q 66_L 0.67 0.01
93_T 72_K 0.66 0.01
104_K 7_V 0.65 0.01
6_P 35_T 0.65 0.01
114_R 83_V 0.63 0.01
72_Y 73_R 0.63 0.01
39_R 36_K 0.61 0.01
89_K 91_A 0.61 0.01
40_P 24_G 0.61 0.01
88_E 65_R 0.60 0.01
10_E 94_G 0.60 0.01
109_K 86_G 0.58 0.01
117_F 23_E 0.58 0.01
77_G 86_G 0.58 0.01
99_L 33_K 0.58 0.01
46_V 67_G 0.58 0.01
110_G 3_T 0.57 0.01
38_H 75_D 0.57 0.01
75_Y 91_A 0.56 0.01
105_G 2_K 0.56 0.01
38_H 90_E 0.56 0.01
63_T 84_A 0.56 0.01
7_K 74_P 0.56 0.01
79_P 28_F 0.56 0.01
56_N 51_V 0.55 0.01
6_P 9_L 0.55 0.01
26_L 55_N 0.55 0.01
105_G 38_E 0.55 0.01
89_K 46_A 0.54 0.01
1_M 14_S 0.54 0.01
4_Y 21_F 0.54 0.01
87_L 76_R 0.54 0.01
16_I 33_K 0.54 0.00
126_P 70_L 0.53 0.00
61_R 25_K 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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