May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L13 - S10
UniProt: P60488 - Q5SHN7
Length: 245
Sequences: 1305
Seq/Len: 5.44
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2dN 3v2eJ 3v2fNContact Map
2j002j00J 2j01N 2j02J 2j03NContact Map
4juw4juwJ 4juxNContact Map
4kix4kixJ 4kiyJ 4kizJ 4kj0J 4kj1J 4kj2J 4kj3J 4kj4JContact Map
4kj54kj5J 4kj6J 4kj7J 4kj8J 4kj9J 4kjaJ 4kjbJ 4kjcJContact Map
3ohc3ohcJ 3ohdJ 3ohjN 3ohkNContact Map
3knh3knhJ 3kniN 3knjJ 3knkNContact Map
3uz63uz6M 3uz7M 3uz8M 3uz9MContact Map
3oge3ogeJ 3ogyJ 3oh5N 3oh7NContact Map
3uyd3uydM 3uyeM 3uyfM 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
1_M 92_T 1.02 0.04
105_G 82_I 0.95 0.03
38_H 53_P 0.86 0.02
31_A 17_D 0.78 0.02
51_F 45_R 0.78 0.02
42_W 44_V 0.74 0.01
45_N 80_K 0.74 0.01
117_F 38_I 0.73 0.01
121_K 86_M 0.73 0.01
94_H 10_G 0.72 0.01
102_A 92_T 0.72 0.01
101_H 10_G 0.71 0.01
33_L 72_V 0.68 0.01
29_K 38_I 0.67 0.01
78_Y 48_T 0.65 0.01
116_L 10_G 0.65 0.01
42_W 59_S 0.65 0.01
97_R 11_F 0.64 0.01
61_R 87_T 0.63 0.01
4_Y 18_A 0.62 0.01
83_K 91_P 0.62 0.01
52_V 22_K 0.61 0.01
20_G 87_T 0.61 0.01
140_V 21_Q 0.60 0.01
38_H 13_H 0.60 0.01
101_H 55_K 0.59 0.01
90_M 30_S 0.59 0.01
53_V 101_V 0.59 0.01
92_A 35_S 0.59 0.01
105_G 92_T 0.59 0.01
88_E 47_F 0.59 0.01
94_H 14_K 0.59 0.01
22_T 14_K 0.58 0.01
78_Y 20_A 0.58 0.01
122_V 22_K 0.58 0.01
7_K 72_V 0.58 0.01
93_T 21_Q 0.58 0.01
75_Y 43_R 0.58 0.01
107_L 19_S 0.57 0.01
99_L 93_G 0.57 0.01
32_T 65_L 0.57 0.01
98_V 18_A 0.56 0.01
61_R 35_S 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 2.3421 seconds.