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OPENSEQ.org
L13 - S20
UniProt: P60488 - P80380
Length: 246
Sequences: 1259
Seq/Len: 5.57
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dN 3v2eT 3v2fNContact Map
2j002j00T 2j01N 2j02T 2j03NContact Map
4juw4juwT 4juxNContact Map
4kix4kixJ 4kiyT 4kizJ 4kj0T 4kj1J 4kj2T 4kj3J 4kj4TContact Map
4kj54kj5J 4kj6T 4kj7J 4kj8T 4kj9J 4kjaT 4kjbJ 4kjcTContact Map
3ohc3ohcT 3ohdT 3ohjN 3ohkNContact Map
3knh3knhT 3kniN 3knjT 3knkNContact Map
3uz63uz6W 3uz7W 3uz8M 3uz9MContact Map
3oge3ogeT 3ogyT 3oh5N 3oh7NContact Map
3uyd3uydW 3uyeM 3uyfW 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_D 37_S 0.83 0.00
62_V 87_K 0.73 0.00
121_K 23_R 0.72 0.00
87_L 63_I 0.71 0.00
100_E 81_K 0.70 0.00
78_Y 22_R 0.68 0.00
62_V 9_N 0.67 0.00
51_F 72_L 0.67 0.00
40_P 59_A 0.65 0.00
16_I 62_L 0.65 0.00
16_I 80_R 0.62 0.00
91_L 25_R 0.62 0.00
93_T 86_R 0.62 0.00
54_V 29_K 0.61 0.00
33_L 30_K 0.60 0.00
58_D 53_L 0.58 0.00
99_L 42_Q 0.58 0.00
76_S 82_S 0.58 0.00
77_G 38_K 0.58 0.00
87_L 66_A 0.57 0.00
55_V 57_R 0.57 0.00
19_E 24_L 0.56 0.00
23_L 15_R 0.56 0.00
113_G 15_R 0.56 0.00
59_K 63_I 0.56 0.00
53_V 85_M 0.55 0.00
14_V 86_R 0.55 0.00
53_V 58_K 0.55 0.00
55_V 54_K 0.54 0.00
119_R 30_K 0.54 0.00
45_N 8_R 0.54 0.00
105_G 13_L 0.54 0.00
85_I 33_I 0.53 0.00
83_K 38_K 0.53 0.00
105_G 64_D 0.53 0.00
74_R 36_L 0.53 0.00
52_V 15_R 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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