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OPENSEQ.org
L13 - S09
UniProt: P60488 - P80374
Length: 268
Sequences: 1578
Seq/Len: 5.93
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dN 3v2eI 3v2fNContact Map
2j002j00I 2j01N 2j02I 2j03NContact Map
4juw4juwI 4juxNContact Map
4kix4kixJ 4kiyI 4kizJ 4kj0I 4kj1J 4kj2I 4kj3J 4kj4IContact Map
4kj54kj5J 4kj6I 4kj7J 4kj8I 4kj9J 4kjaI 4kjbJ 4kjcIContact Map
3knh3knhI 3kniN 3knjI 3knkNContact Map
3ohc3ohcI 3ohdI 3ohjN 3ohkNContact Map
3uz63uz6L 3uz7L 3uz8M 3uz9MContact Map
3u5b3u5cQ 3u5eO 3u5gQ 3u5iOContact Map
3oge3ogeI 3ogyI 3oh5N 3oh7NContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_P 26_V 0.87 0.01
110_G 37_F 0.76 0.00
79_P 118_K 0.74 0.00
12_R 97_K 0.73 0.00
7_K 56_L 0.73 0.00
137_K 13_A 0.71 0.00
109_K 91_D 0.71 0.00
54_V 106_A 0.71 0.00
88_E 33_F 0.69 0.00
90_M 118_K 0.69 0.00
28_T 14_V 0.67 0.00
7_K 41_V 0.66 0.00
71_I 35_E 0.66 0.00
139_E 106_A 0.65 0.00
2_K 30_G 0.65 0.00
129_P 30_G 0.64 0.00
7_K 34_N 0.63 0.00
21_K 50_L 0.63 0.00
57_A 82_A 0.63 0.00
52_V 57_G 0.62 0.00
48_M 26_V 0.62 0.00
4_Y 60_D 0.62 0.00
41_D 43_A 0.61 0.00
111_P 87_Q 0.61 0.00
7_K 27_T 0.61 0.00
139_E 98_P 0.60 0.00
5_V 75_D 0.60 0.00
46_V 30_G 0.59 0.00
69_Q 109_V 0.59 0.00
137_K 27_T 0.59 0.00
105_G 70_K 0.59 0.00
72_Y 63_I 0.58 0.00
127_D 13_A 0.57 0.00
83_K 38_Q 0.57 0.00
16_I 63_I 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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