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OPENSEQ.org
L13 - S04
UniProt: P60488 - P80373
Length: 349
Sequences: 1221
Seq/Len: 3.51
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dN 3v2eD 3v2fNContact Map
2j002j00D 2j01N 2j02D 2j03NContact Map
4juw4juwD 4juxNContact Map
4kix4kixJ 4kiyD 4kizJ 4kj0D 4kj1J 4kj2D 4kj3J 4kj4DContact Map
4kj54kj5J 4kj6D 4kj7J 4kj8D 4kj9J 4kjaD 4kjbJ 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohjN 3ohkNContact Map
3knh3knhD 3kniN 3knjD 3knkNContact Map
3uz63uz6G 3uz7G 3uz8M 3uz9MContact Map
3u5b3u5cJ 3u5eO 3u5gJ 3u5iOContact Map
3oge3ogeD 3ogyD 3oh5N 3oh7NContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_K 174_L 0.83 0.00
54_V 55_A 0.81 0.00
79_P 201_Q 0.76 0.00
43_T 45_Q 0.76 0.00
103_V 110_F 0.75 0.00
129_P 45_Q 0.73 0.00
129_P 209_R 0.72 0.00
137_K 146_I 0.72 0.00
53_V 172_P 0.69 0.00
105_G 191_R 0.68 0.00
114_R 202_L 0.67 0.00
93_T 141_R 0.66 0.00
78_Y 146_I 0.66 0.00
54_V 49_R 0.65 0.00
103_V 78_L 0.65 0.00
78_Y 135_L 0.64 0.00
129_P 85_K 0.64 0.00
117_F 122_R 0.64 0.00
28_T 95_G 0.63 0.00
85_I 206_F 0.63 0.00
71_I 95_G 0.63 0.00
26_L 163_E 0.62 0.00
16_I 181_M 0.61 0.00
114_R 48_A 0.61 0.00
126_P 117_A 0.61 0.00
83_K 187_R 0.61 0.00
93_T 149_A 0.61 0.00
100_E 140_V 0.60 0.00
67_L 180_G 0.60 0.00
113_G 107_R 0.60 0.00
86_P 201_Q 0.59 0.00
100_E 79_F 0.59 0.00
4_Y 140_V 0.59 0.00
96_E 76_R 0.59 0.00
89_K 133_V 0.58 0.00
71_I 77_N 0.58 0.00
61_R 184_K 0.58 0.00
42_W 187_R 0.58 0.00
75_Y 111_A 0.57 0.00
45_N 8_V 0.57 0.00
103_V 11_L 0.57 0.00
130_H 164_A 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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