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OPENSEQ.org

L13 - S02
UniProt: P60488 - P80371
Length: 396
Sequences: 1515
Seq/Len: 4.12
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dN 3v2eB 3v2fNContact Map
2j002j00B 2j01N 2j02B 2j03NContact Map
4juw4juwB 4juxNContact Map
4kix4kixJ 4kiyB 4kizJ 4kj0B 4kj1J 4kj2B 4kj3J 4kj4BContact Map
4kj54kj5J 4kj6B 4kj7J 4kj8B 4kj9J 4kjaB 4kjbJ 4kjcBContact Map
3ohc3ohcB 3ohdB 3ohjN 3ohkNContact Map
3knh3knhB 3kniN 3knjB 3knkNContact Map
3uz63uz6E 3uz7E 3uz8M 3uz9MContact Map
3u5b3u5cA 3u5eO 3u5gA 3u5iOContact Map
3oge3ogeB 3ogyB 3oh5N 3oh7NContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
1_M 101_M 1.00 0.02
123_Y 43_D 0.97 0.02
8_Q 223_I 0.92 0.01
71_I 197_V 0.86 0.01
73_T 66_G 0.82 0.01
35_R 101_M 0.79 0.01
110_G 53_R 0.78 0.01
68_E 164_V 0.76 0.01
139_E 91_P 0.73 0.01
77_G 118_L 0.73 0.01
45_N 161_A 0.73 0.01
118_K 226_R 0.71 0.01
50_D 10_L 0.69 0.01
75_Y 165_V 0.69 0.01
1_M 203_G 0.69 0.01
20_G 186_A 0.68 0.01
129_P 192_S 0.68 0.01
27_A 187_L 0.67 0.01
83_K 85_A 0.67 0.01
6_P 124_S 0.67 0.01
26_L 128_E 0.67 0.01
139_E 90_M 0.66 0.01
42_W 116_E 0.65 0.01
88_E 120_A 0.65 0.01
121_K 181_F 0.65 0.01
134_R 141_E 0.65 0.01
52_V 38_G 0.65 0.01
116_L 84_E 0.64 0.01
110_G 29_A 0.64 0.01
80_G 191_D 0.64 0.01
34_L 197_V 0.63 0.01
116_L 172_I 0.63 0.01
139_E 105_F 0.63 0.01
73_T 140_H 0.62 0.01
19_E 62_A 0.62 0.01
91_L 101_M 0.62 0.01
134_R 210_S 0.61 0.01
3_T 179_K 0.61 0.01
78_Y 162_I 0.61 0.01
21_K 82_R 0.61 0.01
54_V 196_L 0.61 0.01
5_V 33_Y 0.60 0.01
139_E 48_M 0.60 0.01
117_F 186_A 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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