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OPENSEQ.org
L13 - L32
UniProt: P60488 - P80339
Length: 200
Sequences: 925
Seq/Len: 4.70
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dN5 3v2fN5Contact Map
2j002j01N5 2j03N5Contact Map
4juw4juxN5Contact Map
4kix4kixJ0 4kizJ0 4kj1J0 4kj3J0Contact Map
4kj54kj5J0 4kj7J0 4kj9J0 4kjbJ0Contact Map
2zjr2zjrGZContact Map
4btc4btdN5Contact Map
3uyd3uyeM5 3uygM5Contact Map
4gd13r8sJ0 3r8tJ0Contact Map
3ohc3ohjN5 3ohkN5Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_P 39_M 0.91 0.01
82_L 6_V 0.90 0.01
83_K 31_V 0.82 0.01
40_P 34_P 0.76 0.00
75_Y 5_P 0.76 0.00
102_A 42_P 0.74 0.00
81_G 13_K 0.71 0.00
110_G 48_E 0.70 0.00
22_T 45_V 0.68 0.00
16_I 55_R 0.67 0.00
87_L 23_H 0.66 0.00
102_A 43_H 0.64 0.00
74_R 53_A 0.62 0.00
110_G 32_P 0.62 0.00
16_I 23_H 0.62 0.00
67_L 51_Y 0.62 0.00
23_L 41_P 0.61 0.00
41_D 54_G 0.60 0.00
103_V 59_E 0.60 0.00
58_D 59_E 0.59 0.00
40_P 10_K 0.59 0.00
5_V 41_P 0.58 0.00
91_L 38_A 0.58 0.00
34_L 21_S 0.57 0.00
131_Q 29_T 0.57 0.00
109_K 16_R 0.57 0.00
30_I 27_P 0.56 0.00
139_E 6_V 0.56 0.00
81_G 12_S 0.56 0.00
62_V 7_P 0.55 0.00
70_K 7_P 0.55 0.00
134_R 10_K 0.54 0.00
70_K 43_H 0.54 0.00
98_V 16_R 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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