May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L13 - L28
UniProt: P60488 - P60494
Length: 238
Sequences: 1073
Seq/Len: 5.29
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dN1 3v2fN1Contact Map
2j002j01N1 2j03N1Contact Map
4juw4juxN1Contact Map
4kix4kixJX 4kizJX 4kj1JX 4kj3JXContact Map
4kj54kj5JX 4kj7JX 4kj9JX 4kjbJXContact Map
2zjr2zjrGUContact Map
4btc4btdN1Contact Map
3uyd3uyeMZ 3uygMZContact Map
4gd13r8sJX 3r8tJXContact Map
3ohc3ohjN1 3ohkN1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
75_Y 20_R 0.92 0.01
136_E 39_K 0.80 0.01
75_Y 37_I 0.75 0.01
99_L 65_S 0.74 0.01
75_Y 34_T 0.70 0.00
134_R 2_S 0.69 0.00
14_V 13_I 0.67 0.00
120_L 62_V 0.66 0.00
98_V 46_L 0.66 0.00
119_R 47_Q 0.62 0.00
75_Y 19_Q 0.62 0.00
83_K 36_G 0.62 0.00
111_P 18_I 0.62 0.00
116_L 68_P 0.62 0.00
74_R 39_K 0.61 0.00
102_A 44_P 0.60 0.00
7_K 38_S 0.60 0.00
137_K 68_P 0.59 0.00
109_K 60_F 0.59 0.00
117_F 39_K 0.58 0.00
102_A 10_K 0.58 0.00
78_Y 68_P 0.57 0.00
28_T 21_R 0.56 0.00
12_R 69_K 0.55 0.00
123_Y 41_R 0.55 0.00
42_W 37_I 0.55 0.00
69_Q 58_I 0.54 0.00
51_F 46_L 0.54 0.00
126_P 13_I 0.53 0.00
96_E 59_T 0.53 0.00
126_P 18_I 0.53 0.00
61_R 59_T 0.52 0.00
69_Q 36_G 0.52 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.2379 seconds.