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OPENSEQ.org
L13 - L19
UniProt: P60488 - P60490
Length: 286
Sequences: 1221
Seq/Len: 4.77
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dNT 3v2fNTContact Map
2j002j01NT 2j03NTContact Map
4juw4juxNTContact Map
4kix4kixJP 4kizJP 4kj1JP 4kj3JPContact Map
4kj54kj5JP 4kj7JP 4kj9JP 4kjbJPContact Map
2zjr2zjrGMContact Map
4btc4btdNTContact Map
3uyd3uyeMR 3uygMRContact Map
4gd13r8sJP 3r8tJPContact Map
3ohc3ohjNT 3ohkNTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
54_V 104_N 1.04 0.04
103_V 34_V 0.83 0.02
52_V 37_G 0.73 0.01
98_V 39_R 0.72 0.01
23_L 49_V 0.70 0.01
111_P 39_R 0.67 0.01
34_L 35_K 0.67 0.01
3_T 78_L 0.66 0.01
45_N 112_R 0.66 0.01
124_A 65_K 0.65 0.01
127_D 87_D 0.64 0.01
119_R 45_F 0.62 0.01
127_D 83_I 0.62 0.01
139_E 100_Y 0.61 0.01
124_A 10_V 0.60 0.01
97_R 98_K 0.60 0.01
121_K 34_V 0.60 0.01
76_S 75_I 0.60 0.01
93_T 39_R 0.59 0.01
73_T 65_K 0.59 0.01
86_P 8_K 0.59 0.01
124_A 57_F 0.58 0.01
115_R 29_R 0.58 0.01
46_V 109_E 0.58 0.01
104_K 32_Y 0.58 0.01
35_R 110_I 0.57 0.01
123_Y 70_V 0.57 0.01
60_I 20_P 0.57 0.01
100_E 96_R 0.57 0.01
98_V 87_D 0.57 0.01
42_W 54_R 0.56 0.01
14_V 17_T 0.56 0.01
45_N 92_G 0.56 0.01
28_T 101_F 0.55 0.01
120_L 39_R 0.55 0.01
46_V 60_T 0.55 0.01
94_H 45_F 0.55 0.01
45_N 106_S 0.55 0.01
79_P 75_I 0.55 0.01
19_E 83_I 0.55 0.01
84_K 49_V 0.55 0.01
10_E 39_R 0.54 0.01
51_F 66_V 0.54 0.01
122_V 7_I 0.54 0.01
75_Y 27_T 0.54 0.01
98_V 75_I 0.54 0.01
48_M 10_V 0.53 0.01
7_K 18_D 0.53 0.01
105_G 14_Y 0.53 0.01
27_A 81_P 0.53 0.01
100_E 51_R 0.53 0.01
140_V 98_K 0.53 0.01
121_K 11_E 0.53 0.01
98_V 78_L 0.53 0.01
39_R 92_G 0.52 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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