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OPENSEQ.org

L13 - L16
UniProt: P60488 - P60489
Length: 281
Sequences: 1208
Seq/Len: 4.34
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dNQ 3v2fNQContact Map
2j002j01NQ 2j03NQContact Map
4juw4juxNQContact Map
4kix4kixJM 4kizJM 4kj1JM 4kj3JMContact Map
4kj54kj5JM 4kj7JM 4kj9JM 4kjbJMContact Map
2zjr2zjrGJContact Map
4btc4btdNQContact Map
3uyd3uyeMP 3uygMPContact Map
4gd13r8sJM 3r8tJMContact Map
3knh3kniNQ 3knkNQContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
129_P 29_F 0.87 0.00
138_L 74_Y 0.81 0.00
138_L 73_P 0.72 0.00
41_D 64_I 0.72 0.00
1_M 130_K 0.69 0.00
89_K 34_L 0.68 0.00
41_D 136_A 0.67 0.00
82_L 107_A 0.67 0.00
102_A 11_K 0.66 0.00
35_R 50_A 0.66 0.00
72_Y 15_G 0.66 0.00
61_R 131_I 0.64 0.00
78_Y 77_K 0.64 0.00
75_Y 138_D 0.64 0.00
136_E 97_V 0.62 0.00
92_A 42_I 0.61 0.00
61_R 94_V 0.61 0.00
123_Y 36_A 0.61 0.00
104_K 123_H 0.61 0.00
60_I 47_I 0.60 0.00
105_G 120_I 0.60 0.00
2_K 67_R 0.59 0.00
98_V 73_P 0.58 0.00
28_T 80_E 0.58 0.00
83_K 59_R 0.58 0.00
111_P 135_D 0.58 0.00
46_V 129_T 0.58 0.00
54_V 26_Y 0.57 0.00
82_L 81_V 0.57 0.00
57_A 23_G 0.57 0.00
10_E 49_A 0.57 0.00
38_H 80_E 0.57 0.00
74_R 109_V 0.57 0.00
94_H 52_V 0.57 0.00
55_V 31_D 0.57 0.00
130_H 34_L 0.56 0.00
97_R 52_V 0.56 0.00
30_I 81_V 0.56 0.00
131_Q 110_T 0.56 0.00
83_K 135_D 0.55 0.00
109_K 72_K 0.55 0.00
99_L 93_Y 0.55 0.00
30_I 7_M 0.55 0.00
46_V 92_G 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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