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OPENSEQ.org
L13 - S07
UniProt: P60488 - P17291
Length: 296
Sequences: 1447
Seq/Len: 4.89
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dN 3v2eG 3v2fNContact Map
2j002j00G 2j01N 2j02G 2j03NContact Map
4juw4juwG 4juxNContact Map
4kix4kixJ 4kiyG 4kizJ 4kj0G 4kj1J 4kj2G 4kj3J 4kj4GContact Map
4kj54kj5J 4kj6G 4kj7J 4kj8G 4kj9J 4kjaG 4kjbJ 4kjcGContact Map
3ohc3ohcG 3ohdG 3ohjN 3ohkNContact Map
3knh3knhG 3kniN 3knjG 3knkNContact Map
3uz63uz6J 3uz7J 3uz8M 3uz9MContact Map
3oge3ogeG 3ogyG 3oh5N 3oh7NContact Map
3uyd3uydJ 3uyeM 3uyfJ 3uygMContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
7_K 133_G 1.02 0.03
114_R 84_N 1.01 0.03
11_P 152_A 0.81 0.01
101_H 18_Y 0.80 0.01
110_G 130_G 0.80 0.01
20_G 147_A 0.78 0.01
46_V 16_L 0.77 0.01
72_Y 138_K 0.77 0.01
105_G 107_A 0.76 0.01
2_K 156_W 0.74 0.01
89_K 58_P 0.71 0.01
7_K 51_Q 0.70 0.01
23_L 62_F 0.69 0.01
58_D 147_A 0.69 0.01
91_L 154_Y 0.69 0.01
140_V 58_P 0.69 0.01
119_R 152_A 0.69 0.01
6_P 49_I 0.69 0.01
21_K 137_K 0.68 0.01
129_P 83_A 0.67 0.01
101_H 115_R 0.66 0.01
61_R 49_I 0.66 0.01
61_R 143_R 0.65 0.01
16_I 13_Q 0.65 0.01
2_K 36_K 0.65 0.01
50_D 79_R 0.64 0.01
139_E 143_R 0.64 0.01
27_A 58_P 0.64 0.01
113_G 65_A 0.63 0.01
131_Q 108_A 0.63 0.01
88_E 19_G 0.62 0.01
79_P 20_D 0.62 0.01
137_K 18_Y 0.62 0.01
2_K 61_V 0.62 0.01
1_M 43_F 0.62 0.01
28_T 63_K 0.62 0.01
27_A 14_P 0.62 0.01
100_E 138_K 0.62 0.01
48_M 152_A 0.62 0.01
111_P 98_S 0.62 0.01
58_D 104_L 0.61 0.01
1_M 2_A 0.61 0.01
79_P 76_R 0.61 0.01
104_K 121_A 0.60 0.01
5_V 149_R 0.60 0.01
33_L 124_L 0.59 0.01
46_V 21_V 0.59 0.01
60_I 133_G 0.59 0.01
54_V 94_R 0.59 0.01
61_R 56_Q 0.58 0.01
54_V 103_W 0.58 0.01
55_V 61_V 0.58 0.01
11_P 24_T 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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