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OPENSEQ.org
RL3 - SECY
UniProt: P60438 - P0AGA2
Length: 652
Sequences: 825
Seq/Len: 1.28
I_Prob: 0.06
RL3 - 50S ribosomal protein L3
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL3 		SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
187_L 228_F 1.48 0.06
116_K 89_S 1.42 0.05
169_R 256_R 1.41 0.05
173_Q 268_K 1.40 0.05
17_E 217_F 1.23 0.03
113_S 61_I 1.22 0.03
19_G 333_T 1.21 0.03
68_F 263_T 1.21 0.03
79_L 228_F 1.18 0.03
41_A 306_I 1.16 0.02
27_I 319_L 1.16 0.02
22_I 375_L 1.14 0.02
125_W 290_I 1.13 0.02
154_K 62_E 1.11 0.02
18_D 22_R 1.09 0.02
160_K 18_E 1.08 0.02
109_V 366_I 1.05 0.02
46_R 77_I 1.05 0.02
192_A 154_F 1.04 0.02
201_L 72_L 1.04 0.02
107_V 283_I 1.03 0.02
32_N 234_V 1.03 0.02
174_S 226_L 1.02 0.02
15_F 414_M 1.01 0.01
73_V 440_G 1.00 0.01
180_V 222_L 1.00 0.01
122_V 283_I 0.97 0.01
155_V 176_E 0.97 0.01
92_V 203_I 0.97 0.01
94_Q 330_F 0.96 0.01
43_D 422_T 0.96 0.01
42_N 56_Q 0.96 0.01
207_V 333_T 0.96 0.01
133_T 418_A 0.95 0.01
65_A 283_I 0.95 0.01
165_M 20_K 0.94 0.01
17_E 291_A 0.94 0.01
201_L 130_F 0.93 0.01
119_A 103_A 0.93 0.01
177_V 402_G 0.93 0.01
133_T 39_I 0.93 0.01
183_E 207_I 0.93 0.01
198_G 370_M 0.92 0.01
193_V 24_L 0.92 0.01
31_A 245_V 0.92 0.01
162_A 58_G 0.92 0.01
109_V 326_I 0.92 0.01
83_R 197_A 0.91 0.01
162_A 53_L 0.91 0.01
48_I 73_S 0.91 0.01
75_A 78_F 0.91 0.01
29_V 132_S 0.91 0.01
62_K 378_A 0.91 0.01
77_R 439_K 0.91 0.01
116_K 356_I 0.90 0.01
153_G 346_L 0.90 0.01
125_W 250_K 0.90 0.01
173_Q 161_V 0.90 0.01
15_F 358_P 0.90 0.01
60_V 108_E 0.89 0.01
189_V 221_L 0.89 0.01
53_G 369_V 0.89 0.01
68_F 353_V 0.89 0.01
199_S 153_G 0.89 0.01
52_T 199_L 0.89 0.01
192_A 342_T 0.88 0.01
100_L 174_L 0.88 0.01
55_K 65_N 0.88 0.01
158_G 167_G 0.88 0.01
168_E 197_A 0.88 0.01
3_G 194_G 0.88 0.01
105_K 46_A 0.87 0.01
113_S 168_T 0.87 0.01
107_V 256_R 0.87 0.01
179_R 320_L 0.87 0.01
83_R 72_L 0.87 0.01
164_Q 264_H 0.86 0.01
6_G 249_A 0.86 0.01
199_S 271_M 0.86 0.01
172_V 33_F 0.86 0.01
119_A 133_I 0.86 0.01
190_K 365_Y 0.86 0.01
128_R 25_F 0.86 0.01
107_V 197_A 0.86 0.01
133_T 257_V 0.86 0.01
79_L 366_I 0.85 0.01
169_R 221_L 0.85 0.01
164_Q 102_L 0.85 0.01
204_K 434_K 0.85 0.01
188_L 18_E 0.85 0.01
60_V 341_E 0.85 0.01
96_I 63_M 0.85 0.01
53_G 385_C 0.84 0.01
63_P 95_L 0.84 0.01
36_Q 249_A 0.84 0.01
170_V 269_V 0.84 0.01
118_F 394_A 0.84 0.01
164_Q 433_L 0.84 0.01
190_K 68_S 0.84 0.01
192_A 161_V 0.83 0.01
47_A 109_G 0.83 0.01
62_K 95_L 0.83 0.01
138_L 71_A 0.83 0.01
12_T 339_P 0.83 0.01
102_A 92_I 0.82 0.01
201_L 163_S 0.82 0.01
98_V 244_I 0.82 0.01
7_K 96_T 0.82 0.01
30_E 371_T 0.82 0.01
202_I 104_E 0.82 0.01
174_S 341_E 0.82 0.01
96_I 254_G 0.82 0.01
92_V 257_V 0.82 0.01
118_F 82_I 0.82 0.01
193_V 153_G 0.82 0.01
154_K 127_L 0.81 0.01
153_G 366_I 0.81 0.01
34_V 431_S 0.81 0.01
125_W 284_I 0.81 0.01
50_V 18_E 0.81 0.01
38_K 37_S 0.81 0.01
105_K 39_I 0.81 0.01
169_R 82_I 0.81 0.01
50_V 198_G 0.81 0.01
58_N 422_T 0.81 0.01
96_I 217_F 0.80 0.01
127_F 415_D 0.80 0.01
64_E 385_C 0.80 0.01
89_E 225_V 0.80 0.01
174_S 268_K 0.80 0.01
60_V 234_V 0.80 0.01
118_F 199_L 0.80 0.01
149_N 422_T 0.80 0.01
63_P 17_G 0.79 0.01
16_T 130_F 0.79 0.01
43_D 366_I 0.79 0.01
173_Q 384_I 0.79 0.01
38_K 430_E 0.79 0.01
29_V 283_I 0.79 0.01
21_S 415_D 0.79 0.01
61_T 439_K 0.79 0.01
177_V 133_I 0.79 0.01
86_E 307_S 0.79 0.01
197_T 349_S 0.78 0.01
184_R 176_E 0.78 0.01
190_K 366_I 0.78 0.01
169_R 229_A 0.78 0.01
186_L 82_I 0.78 0.01
40_L 246_V 0.78 0.01
165_M 102_L 0.78 0.01
22_I 346_L 0.78 0.01
96_I 369_V 0.78 0.01
128_R 159_T 0.78 0.01
4_L 76_S 0.77 0.01
155_V 405_S 0.77 0.01
60_V 255_R 0.77 0.01
14_I 48_V 0.77 0.01
196_A 269_V 0.77 0.01
86_E 243_R 0.77 0.01
199_S 133_I 0.77 0.01
98_V 23_L 0.77 0.01
116_K 92_I 0.77 0.01
65_A 251_R 0.77 0.01
55_K 385_C 0.77 0.01
57_A 384_I 0.76 0.01
30_E 431_S 0.76 0.01
198_G 433_L 0.76 0.01
55_K 66_M 0.76 0.01
51_T 416_F 0.76 0.01
157_K 424_M 0.76 0.01
94_Q 323_S 0.76 0.01
28_E 91_I 0.76 0.01
116_K 234_V 0.76 0.01
107_V 396_K 0.76 0.01
56_K 22_R 0.76 0.01
39_D 105_I 0.76 0.01
48_I 18_E 0.76 0.01
172_V 110_E 0.76 0.01
184_R 251_R 0.76 0.01
37_V 395_M 0.76 0.01
22_I 229_A 0.76 0.01
67_H 179_T 0.75 0.01
82_F 235_V 0.75 0.01
193_V 256_R 0.75 0.01
96_I 319_L 0.75 0.01
91_T 218_L 0.75 0.01
198_G 415_D 0.75 0.01
110_T 189_I 0.75 0.01
7_K 372_R 0.75 0.01
9_V 235_V 0.75 0.01
168_E 286_F 0.75 0.01
48_I 288_A 0.75 0.01
96_I 162_V 0.75 0.01
200_D 171_L 0.75 0.01
187_L 28_G 0.75 0.01
178_V 228_F 0.75 0.01
143_P 118_Q 0.75 0.01
102_A 24_L 0.75 0.01
97_S 294_F 0.75 0.01
55_K 209_Q 0.75 0.01
154_K 423_L 0.75 0.01
201_L 314_Q 0.75 0.01
36_Q 180_E 0.75 0.01
12_T 235_V 0.74 0.01
185_N 286_F 0.74 0.01
172_V 82_I 0.74 0.01
106_K 395_M 0.74 0.01
204_K 384_I 0.74 0.01
164_Q 192_F 0.74 0.01
99_E 216_H 0.74 0.01
21_S 286_F 0.74 0.01
118_F 291_A 0.74 0.01
187_L 124_T 0.74 0.01
139_S 194_G 0.74 0.01
133_T 415_D 0.74 0.01
57_A 312_P 0.73 0.01
82_F 405_S 0.73 0.01
153_G 172_M 0.73 0.01
61_T 27_I 0.73 0.01
162_A 375_L 0.73 0.01
187_L 439_K 0.73 0.01
96_I 285_L 0.73 0.01
79_L 207_I 0.73 0.01
110_T 115_K 0.73 0.01
48_I 129_I 0.73 0.01
61_T 221_L 0.73 0.01
185_N 294_F 0.73 0.01
176_D 264_H 0.73 0.01
155_V 82_I 0.73 0.01
131_D 413_I 0.72 0.01
131_D 75_A 0.72 0.01
187_L 163_S 0.72 0.01
64_E 368_K 0.72 0.01
172_V 286_F 0.72 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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