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OPENSEQ.org
L02 - L17
UniProt: P60405 - Q9Z9H5
Length: 394
Sequences: 1173
Seq/Len: 2.98
I_Prob: 0.10
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dDR 3v2fDRContact Map
2j002j01DR 2j03DRContact Map
4juw4juxDRContact Map
4kix4kixCN 4kizCN 4kj1CN 4kj3CNContact Map
4kj54kj5CN 4kj7CN 4kj9CN 4kjbCNContact Map
2zjr2zjrAKContact Map
4btc4btdDRContact Map
3uyd3uyeD0 3uygD0Contact Map
4gd13r8sCN 3r8tCNContact Map
3knh3kniDR 3knkDRContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
225_A 40_K 1.20 0.10
244_R 110_P 0.85 0.03
162_S 48_V 0.83 0.03
153_A 89_D 0.78 0.02
149_P 28_L 0.73 0.02
239_R 97_V 0.71 0.02
267_S 98_L 0.66 0.02
204_I 110_P 0.66 0.01
15_F 114_V 0.66 0.01
155_L 18_L 0.66 0.01
168_R 69_D 0.65 0.01
225_A 44_L 0.64 0.01
158_A 55_A 0.64 0.01
187_G 25_A 0.63 0.01
164_Q 106_G 0.62 0.01
115_Q 29_L 0.62 0.01
34_V 35_T 0.62 0.01
11_P 55_A 0.62 0.01
119_A 26_K 0.61 0.01
78_K 15_S 0.61 0.01
79_V 46_G 0.61 0.01
264_K 112_A 0.61 0.01
221_V 98_L 0.60 0.01
65_I 4_L 0.59 0.01
41_G 83_I 0.59 0.01
10_T 49_D 0.58 0.01
39_K 51_L 0.58 0.01
60_R 57_R 0.58 0.01
240_A 23_N 0.58 0.01
276_K 26_K 0.58 0.01
167_G 46_G 0.57 0.01
112_Q 39_P 0.57 0.01
269_F 70_L 0.57 0.01
12_S 12_R 0.57 0.01
258_K 20_L 0.56 0.01
133_L 108_G 0.56 0.01
141_V 20_L 0.56 0.01
115_Q 31_H 0.56 0.01
41_G 11_N 0.56 0.01
111_L 89_D 0.56 0.01
95_L 61_H 0.56 0.01
6_F 100_L 0.56 0.01
80_A 38_V 0.56 0.01
6_F 50_H 0.56 0.01
169_E 8_R 0.56 0.01
117_V 15_S 0.56 0.01
261_K 89_D 0.56 0.01
168_R 12_R 0.55 0.01
19_A 35_T 0.55 0.01
224_A 40_K 0.55 0.01
17_T 3_H 0.55 0.01
107_A 109_A 0.55 0.01
38_K 83_I 0.55 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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