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OPENSEQ.org
L02 - L07
UniProt: P60405 - Q8VVE2
Length: 401
Sequences: 1277
Seq/Len: 3.19
I_Prob: 0.05
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01DL 2j03DLContact Map
4kix4kixC6 4kizC 4kj1C 4kj3CContact Map
3i8f3i8fD 3i8iDIJContact Map
3sfs3sgfCLKMJContact Map
2zjq2zjqA5Contact Map
4kd84kd9De 4kdbDeContact Map
4kcy4kczDe 4kd2DeContact Map
3uoq3uosCKLMJContact Map
4kbt4kbuDe 4kbwDeContact Map
4kdg4kdhDe 4kdkDeContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
239_R 16_T 1.12 0.05
141_V 107_E 0.73 0.01
58_H 16_T 0.69 0.01
127_V 110_E 0.68 0.01
253_Q 57_K 0.67 0.01
233_H 24_I 0.66 0.01
149_P 30_A 0.64 0.01
106_I 52_A 0.64 0.01
18_V 9_K 0.63 0.01
2_A 73_E 0.63 0.01
46_Q 30_A 0.62 0.01
26_K 91_D 0.61 0.01
10_T 17_V 0.60 0.01
242_R 13_S 0.60 0.01
158_A 103_V 0.60 0.01
136_I 41_V 0.59 0.01
166_Q 20_L 0.58 0.01
184_K 113_K 0.58 0.01
240_A 1_M 0.58 0.01
175_L 64_L 0.57 0.01
188_E 1_M 0.57 0.01
261_K 109_E 0.57 0.01
168_R 117_A 0.57 0.01
34_V 16_T 0.56 0.01
272_A 17_V 0.56 0.01
155_L 21_K 0.56 0.01
16_M 20_L 0.56 0.01
166_Q 15_A 0.56 0.01
240_A 9_K 0.55 0.01
98_V 106_Q 0.55 0.01
225_A 73_E 0.55 0.01
187_G 77_E 0.55 0.01
17_T 8_I 0.54 0.01
133_L 123_E 0.54 0.01
89_S 66_E 0.54 0.01
2_A 69_A 0.54 0.01
148_E 70_K 0.54 0.01
166_Q 22_Q 0.53 0.01
127_V 78_L 0.53 0.01
253_Q 107_E 0.53 0.01
182_L 27_L 0.53 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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