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OPENSEQ.org
L02 - L09
UniProt: P60405 - Q5SLQ1
Length: 424
Sequences: 1271
Seq/Len: 3.00
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dDI 3v2fDIContact Map
2j002j01DI 2j03DIContact Map
4kix4kixCH 4kizCH 4kj1CH 4kj3CHContact Map
4kj54kj5CH 4kj7CH 4kj9CH 4kjbCHContact Map
3uyd3uyeDK 3uygDKContact Map
4gd13r8sCH 3r8tCHContact Map
3knh3kniDI 3knkDIContact Map
3ohc3ohjDI 3ohkDIContact Map
3ohy3ohzDI 3oi1DIContact Map
3f1e3f1fDI 3f1hDIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
225_A 69_K 0.99 0.01
89_S 78_T 0.98 0.01
117_V 76_T 0.89 0.01
247_A 17_Q 0.80 0.00
127_V 31_L 0.80 0.00
248_S 96_D 0.78 0.00
73_V 89_Y 0.78 0.00
16_M 22_K 0.78 0.00
41_G 19_V 0.77 0.00
65_I 83_A 0.77 0.00
168_R 101_L 0.76 0.00
275_K 101_L 0.76 0.00
65_I 139_Q 0.75 0.00
11_P 27_R 0.73 0.00
95_L 140_L 0.73 0.00
11_P 12_L 0.73 0.00
87_N 91_S 0.73 0.00
10_T 88_I 0.72 0.00
54_R 111_P 0.71 0.00
147_L 128_L 0.70 0.00
11_P 69_K 0.70 0.00
12_S 118_K 0.69 0.00
239_R 62_K 0.69 0.00
95_L 114_L 0.69 0.00
12_S 17_Q 0.68 0.00
142_V 2_K 0.67 0.00
95_L 120_I 0.67 0.00
95_L 102_S 0.66 0.00
214_W 126_Y 0.66 0.00
144_A 14_D 0.66 0.00
166_Q 111_P 0.65 0.00
36_P 47_L 0.65 0.00
49_I 142_V 0.65 0.00
166_Q 5_L 0.64 0.00
138_V 23_P 0.64 0.00
3_V 116_L 0.63 0.00
248_S 127_V 0.63 0.00
188_E 50_R 0.62 0.00
10_T 59_A 0.61 0.00
273_R 98_A 0.61 0.00
133_L 107_V 0.61 0.00
169_E 80_P 0.60 0.00
20_D 81_V 0.60 0.00
58_H 133_H 0.60 0.00
220_H 62_K 0.60 0.00
78_K 142_V 0.60 0.00
134_R 33_R 0.60 0.00
196_V 109_I 0.60 0.00
82_I 110_D 0.60 0.00
76_P 41_E 0.59 0.00
17_T 140_L 0.59 0.00
35_K 103_R 0.58 0.00
240_A 92_V 0.58 0.00
197_G 58_L 0.58 0.00
190_Y 89_Y 0.58 0.00
106_I 126_Y 0.58 0.00
264_K 49_A 0.57 0.00
161_T 56_K 0.57 0.00
263_R 77_L 0.57 0.00
266_S 96_D 0.57 0.00
184_K 26_A 0.57 0.00
117_V 55_A 0.56 0.00
178_P 112_K 0.56 0.00
64_I 141_K 0.56 0.00
186_H 101_L 0.56 0.00
10_T 121_K 0.56 0.00
54_R 1_M 0.56 0.00
176_R 86_T 0.55 0.00
59_K 116_L 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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