May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - S18
UniProt: P60405 - Q5SLQ0
Length: 364
Sequences: 977
Seq/Len: 2.84
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cR 3v2dD 3v2eR 3v2fDContact Map
2j002j00R 2j01D 2j02R 2j03DContact Map
4juw4juwR 4juxDContact Map
4kix4kixC 4kiyR 4kizC 4kj0R 4kj1C 4kj2R 4kj3C 4kj4RContact Map
4kj54kj5C 4kj6R 4kj7C 4kj8R 4kj9C 4kjaR 4kjbC 4kjcRContact Map
3ohc3ohcR 3ohdR 3ohjD 3ohkDContact Map
3knh3knhR 3kniD 3knjR 3knkDContact Map
3uz63uz6U 3uz7U 3uz8D 3uz9DContact Map
3oge3ogeR 3ogyR 3oh5D 3oh7DContact Map
3uyd3uydU 3uyeD 3uyfU 3uygDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
51_V 70_I 0.84 0.00
193_V 79_L 0.82 0.00
58_H 43_F 0.82 0.00
153_A 30_D 0.81 0.00
113_V 52_P 0.80 0.00
203_N 38_E 0.79 0.00
10_T 26_L 0.78 0.00
115_Q 20_A 0.74 0.00
175_L 38_E 0.73 0.00
255_K 23_K 0.72 0.00
118_V 44_L 0.72 0.00
202_K 67_A 0.71 0.00
225_A 21_K 0.71 0.00
267_S 37_V 0.70 0.00
176_R 43_F 0.69 0.00
7_K 70_I 0.69 0.00
158_A 82_T 0.69 0.00
93_A 49_K 0.68 0.00
215_L 36_N 0.68 0.00
131_L 19_K 0.66 0.00
149_P 75_I 0.66 0.00
131_L 64_R 0.66 0.00
200_D 81_F 0.66 0.00
176_R 45_S 0.66 0.00
70_W 70_I 0.64 0.00
124_P 47_T 0.64 0.00
202_K 66_L 0.61 0.00
272_A 19_K 0.61 0.00
15_F 55_R 0.61 0.00
193_V 82_T 0.61 0.00
184_K 51_L 0.60 0.00
240_A 45_S 0.60 0.00
5_K 36_N 0.60 0.00
147_L 40_L 0.60 0.00
149_P 66_L 0.60 0.00
115_Q 43_F 0.60 0.00
225_A 17_S 0.59 0.00
6_F 45_S 0.59 0.00
151_K 76_L 0.59 0.00
174_I 77_G 0.59 0.00
15_F 23_K 0.59 0.00
119_A 45_S 0.58 0.00
121_P 32_R 0.58 0.00
92_I 70_I 0.58 0.00
3_V 41_K 0.58 0.00
239_R 59_S 0.57 0.00
132_P 76_L 0.57 0.00
254_T 47_T 0.57 0.00
257_L 46_E 0.57 0.00
259_T 57_G 0.57 0.00
23_E 44_L 0.57 0.00
205_V 70_I 0.57 0.00
132_P 64_R 0.57 0.00
17_T 17_S 0.57 0.00
233_H 23_K 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.6707 seconds.