May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - S06
UniProt: P60405 - Q5SLP8
Length: 377
Sequences: 1022
Seq/Len: 2.73
I_Prob: 0.38
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2dD 3v2eF 3v2fDContact Map
2j002j00F 2j01D 2j02F 2j03DContact Map
4juw4juwF 4juxDContact Map
4kix4kixC 4kiyF 4kizC 4kj0F 4kj1C 4kj2F 4kj3C 4kj4FContact Map
4kj54kj5C 4kj6F 4kj7C 4kj8F 4kj9C 4kjaF 4kjbC 4kjcFContact Map
3ohc3ohcF 3ohdF 3ohjD 3ohkDContact Map
3knh3knhF 3kniD 3knjF 3knkDContact Map
3uz63uz6I 3uz7I 3uz8D 3uz9DContact Map
3oge3ogeF 3ogyF 3oh5D 3oh7DContact Map
3uyd3uydI 3uyeD 3uyfI 3uygDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
124_P 77_R 1.37 0.38
124_P 78_E 1.05 0.16
124_P 74_D 1.03 0.15
126_Q 74_D 1.01 0.14
212_S 72_V 0.90 0.09
168_R 53_A 0.87 0.08
261_K 34_G 0.82 0.07
22_S 71_R 0.80 0.06
201_H 30_L 0.79 0.06
64_I 34_G 0.78 0.06
117_V 14_L 0.76 0.05
163_A 50_Y 0.74 0.05
118_V 91_V 0.73 0.05
217_R 36_R 0.72 0.04
163_A 30_L 0.72 0.04
46_Q 53_A 0.72 0.04
75_I 3_R 0.71 0.04
125_I 77_R 0.71 0.04
197_G 55_D 0.71 0.04
193_V 37_V 0.70 0.04
156_A 36_R 0.70 0.04
103_R 85_V 0.69 0.04
182_L 37_V 0.69 0.04
117_V 49_A 0.69 0.04
185_V 51_P 0.69 0.04
89_S 94_Q 0.68 0.04
103_R 2_R 0.68 0.04
162_S 68_P 0.68 0.04
142_V 28_R 0.68 0.04
158_A 17_S 0.68 0.04
31_K 24_E 0.67 0.03
240_A 55_D 0.66 0.03
263_R 43_L 0.66 0.03
75_I 85_V 0.65 0.03
124_P 26_I 0.65 0.03
23_E 31_E 0.65 0.03
182_L 28_R 0.65 0.03
155_L 65_V 0.64 0.03
11_P 71_R 0.64 0.03
125_I 74_D 0.64 0.03
82_I 46_R 0.63 0.03
119_A 76_A 0.63 0.03
113_V 17_S 0.63 0.03
39_K 83_D 0.63 0.03
162_S 82_R 0.63 0.03
101_E 44_G 0.63 0.03
156_A 45_L 0.63 0.03
169_E 27_Q 0.63 0.03
269_F 71_R 0.62 0.03
111_L 36_R 0.62 0.03
225_A 23_K 0.62 0.03
275_K 85_V 0.61 0.03
117_V 68_P 0.61 0.03
52_R 81_I 0.61 0.03
122_D 25_I 0.61 0.03
239_R 18_Q 0.60 0.03
255_K 57_Q 0.60 0.03
107_A 43_L 0.60 0.02
78_K 94_Q 0.60 0.02
163_A 27_Q 0.60 0.02
122_D 91_V 0.60 0.02
141_V 37_V 0.59 0.02
75_I 61_L 0.59 0.02
103_R 7_N 0.59 0.02
7_K 80_R 0.59 0.02
32_S 30_L 0.59 0.02
177_L 82_R 0.58 0.02
164_Q 62_W 0.58 0.02
276_K 85_V 0.58 0.02
244_R 7_N 0.58 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.2834 seconds.