May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - L35
UniProt: P60405 - Q5SKU1
Length: 341
Sequences: 977
Seq/Len: 2.87
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dD8 3v2fD8Contact Map
2j002j01D8 2j03D8Contact Map
4juw4juxD8Contact Map
4kix4kixC3 4kizC3 4kj1C3 4kj3C3Contact Map
4kj54kj5C3 4kj7C3 4kj9C3 4kjbC3Contact Map
2zjr2zjrA3Contact Map
4btc4btdD8Contact Map
3uyd3uyeD8 3uygD8Contact Map
4gd13r8sC3 3r8tC3Contact Map
3knh3kniD8 3knkD8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
142_V 17_T 0.78 0.00
127_V 57_R 0.72 0.00
112_Q 62_L 0.70 0.00
153_A 9_G 0.68 0.00
145_V 58_I 0.67 0.00
36_P 15_K 0.67 0.00
51_V 11_K 0.65 0.00
267_S 51_A 0.64 0.00
225_A 40_E 0.64 0.00
75_I 4_M 0.64 0.00
145_V 48_F 0.63 0.00
113_V 28_G 0.62 0.00
155_L 15_K 0.62 0.00
82_I 56_E 0.62 0.00
118_V 59_K 0.62 0.00
271_I 44_K 0.62 0.00
271_I 15_K 0.62 0.00
262_R 63_P 0.61 0.00
195_A 63_P 0.61 0.00
158_A 18_A 0.60 0.00
91_R 7_H 0.60 0.00
202_K 62_L 0.60 0.00
247_A 33_N 0.59 0.00
158_A 64_Y 0.59 0.00
269_F 28_G 0.59 0.00
23_E 26_K 0.59 0.00
250_W 63_P 0.58 0.00
206_L 9_G 0.58 0.00
134_R 9_G 0.58 0.00
52_R 49_V 0.58 0.00
78_K 32_L 0.57 0.00
166_Q 40_E 0.57 0.00
28_E 61_L 0.56 0.00
140_T 37_S 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8903 seconds.