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OPENSEQ.org
L02 - S16
UniProt: P60405 - Q5SJH3
Length: 364
Sequences: 1266
Seq/Len: 3.51
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dD 3v2eP 3v2fDContact Map
2j002j00P 2j01D 2j02P 2j03DContact Map
4juw4juwP 4juxDContact Map
4kix4kixC 4kiyP 4kizC 4kj0P 4kj1C 4kj2P 4kj3C 4kj4PContact Map
4kj54kj5C 4kj6P 4kj7C 4kj8P 4kj9C 4kjaP 4kjbC 4kjcPContact Map
3ohc3ohcP 3ohdP 3ohjD 3ohkDContact Map
3knh3knhP 3kniD 3knjP 3knkDContact Map
3uz63uz6S 3uz7S 3uz8D 3uz9DContact Map
3oge3ogeP 3ogyP 3oh5D 3oh7DContact Map
3uyd3uydS 3uyeD 3uyfS 3uygDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
61_L 36_I 0.92 0.00
39_K 19_I 0.79 0.00
77_A 42_R 0.72 0.00
76_P 36_I 0.72 0.00
174_I 7_A 0.72 0.00
188_E 19_I 0.71 0.00
193_V 20_V 0.64 0.00
176_R 4_I 0.63 0.00
174_I 17_Y 0.63 0.00
200_D 70_A 0.63 0.00
197_G 18_R 0.61 0.00
138_V 21_V 0.60 0.00
267_S 69_T 0.60 0.00
7_K 21_V 0.60 0.00
144_A 17_Y 0.59 0.00
162_S 7_A 0.59 0.00
264_K 35_K 0.59 0.00
267_S 20_V 0.59 0.00
15_F 36_I 0.59 0.00
214_W 54_E 0.58 0.00
111_L 15_P 0.58 0.00
269_F 75_R 0.57 0.00
112_Q 67_T 0.56 0.00
149_P 40_D 0.56 0.00
269_F 24_A 0.56 0.00
60_R 29_D 0.55 0.00
272_A 2_V 0.55 0.00
112_Q 57_R 0.55 0.00
8_P 32_Y 0.54 0.00
106_I 81_R 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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