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OPENSEQ.org
L02 - L31
UniProt: P60405 - Q5SJE1
Length: 347
Sequences: 1031
Seq/Len: 3.03
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dD4 3v2fD4Contact Map
2j002j01D4 2j03D4Contact Map
4juw4juxD4Contact Map
4btc4btdD4Contact Map
3uyd3uyeD4 3uygD4Contact Map
3ohc3ohjD4 3ohkD4Contact Map
3knh3kniD4 3knkD4Contact Map
3f1e3f1fD4 3f1hD4Contact Map
3ohy3ohzD4 3oi1D4Contact Map
3v223v23D4 3v25D4Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
148_E 60_Q 0.92 0.00
164_Q 63_Y 0.79 0.00
257_L 48_R 0.75 0.00
158_A 62_R 0.74 0.00
6_F 34_E 0.73 0.00
268_R 60_Q 0.71 0.00
131_L 62_R 0.69 0.00
225_A 63_Y 0.68 0.00
177_L 52_T 0.66 0.00
176_R 62_R 0.64 0.00
10_T 58_R 0.62 0.00
167_G 43_Y 0.61 0.00
95_L 20_N 0.61 0.00
264_K 63_Y 0.61 0.00
45_N 56_V 0.60 0.00
203_N 14_I 0.58 0.00
134_R 61_R 0.58 0.00
233_H 32_Y 0.57 0.00
37_L 48_R 0.57 0.00
258_K 57_E 0.57 0.00
161_T 58_R 0.57 0.00
65_I 64_G 0.57 0.00
203_N 57_E 0.57 0.00
103_R 34_E 0.56 0.00
265_P 34_E 0.56 0.00
185_V 21_V 0.55 0.00
142_V 4_G 0.55 0.00
41_G 15_I 0.55 0.00
261_K 61_R 0.55 0.00
190_Y 34_E 0.55 0.00
142_V 61_R 0.54 0.00
41_G 9_L 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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