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OPENSEQ.org
L02 - L15
UniProt: P60405 - Q5SHQ7
Length: 426
Sequences: 1322
Seq/Len: 3.15
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoALOContact Map
1vq81vq8ALOContact Map
1vqp1vqpALOContact Map
1vqm1vqmALOContact Map
1vql1vqlALOContact Map
1vqk1vqkALOContact Map
1yhq1yhqALOContact Map
1s721s72ALOContact Map
1vq91vq9ALOContact Map
1vqn1vqnALOContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
258_K 92_E 0.97 0.01
153_A 129_A 0.83 0.00
233_H 38_Q 0.83 0.00
221_V 106_L 0.77 0.00
261_K 144_E 0.75 0.00
168_R 6_L 0.75 0.00
130_A 58_T 0.73 0.00
15_F 81_Q 0.73 0.00
48_R 136_E 0.73 0.00
45_N 131_S 0.72 0.00
225_A 82_G 0.72 0.00
189_C 24_G 0.71 0.00
41_G 2_K 0.71 0.00
23_E 96_T 0.71 0.00
225_A 124_K 0.70 0.00
35_K 141_A 0.69 0.00
91_R 87_D 0.69 0.00
167_G 76_K 0.68 0.00
203_N 137_K 0.67 0.00
149_P 125_V 0.66 0.00
58_H 23_P 0.66 0.00
6_F 65_R 0.66 0.00
166_Q 2_K 0.65 0.00
91_R 129_A 0.64 0.00
161_T 102_R 0.63 0.00
180_G 66_G 0.63 0.00
120_G 61_R 0.62 0.00
188_E 79_R 0.62 0.00
123_A 131_S 0.61 0.00
151_K 40_S 0.61 0.00
241_P 59_L 0.60 0.00
7_K 87_D 0.60 0.00
148_E 129_A 0.59 0.00
197_G 111_R 0.59 0.00
96_H 33_R 0.59 0.00
158_A 59_L 0.59 0.00
54_R 145_P 0.59 0.00
162_S 100_L 0.59 0.00
249_P 29_K 0.59 0.00
132_P 59_L 0.59 0.00
214_W 23_P 0.58 0.00
91_R 32_T 0.58 0.00
250_W 38_Q 0.58 0.00
177_L 123_L 0.58 0.00
144_A 31_A 0.57 0.00
89_S 68_Q 0.57 0.00
255_K 23_P 0.57 0.00
266_S 4_S 0.56 0.00
134_R 33_R 0.56 0.00
3_V 70_Q 0.56 0.00
254_T 69_G 0.56 0.00
116_Q 107_K 0.56 0.00
34_V 2_K 0.56 0.00
272_A 31_A 0.56 0.00
2_A 82_G 0.55 0.00
269_F 96_T 0.55 0.00
221_V 44_G 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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