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OPENSEQ.org
L02 - L30
UniProt: P60405 - Q5SHQ6
Length: 336
Sequences: 843
Seq/Len: 2.51
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoAWContact Map
1vq81vq8AWContact Map
1vqp1vqpAWContact Map
1vqm1vqmAWContact Map
1vql1vqlAWContact Map
1vqk1vqkAWContact Map
1yhq1yhqAWContact Map
1s721s72AWContact Map
1vq91vq9AWContact Map
1vqn1vqnAWContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
203_N 19_Q 0.94 0.00
32_S 30_R 0.93 0.00
203_N 52_H 0.90 0.00
199_A 8_L 0.83 0.00
168_R 14_G 0.80 0.00
6_F 4_L 0.76 0.00
106_I 60_E 0.74 0.00
38_K 6_V 0.72 0.00
262_R 19_Q 0.72 0.00
145_V 18_D 0.71 0.00
185_V 37_L 0.71 0.00
91_R 17_K 0.70 0.00
148_E 9_V 0.69 0.00
202_K 8_L 0.69 0.00
111_L 53_L 0.68 0.00
155_L 2_P 0.68 0.00
202_K 31_L 0.68 0.00
10_T 44_R 0.67 0.00
162_S 23_L 0.67 0.00
257_L 31_L 0.67 0.00
169_E 12_P 0.66 0.00
27_T 30_R 0.66 0.00
16_M 8_L 0.66 0.00
176_R 20_K 0.64 0.00
193_V 53_L 0.64 0.00
250_W 39_D 0.63 0.00
64_I 9_V 0.62 0.00
64_I 58_V 0.62 0.00
3_V 36_V 0.61 0.00
156_A 3_R 0.61 0.00
81_A 57_E 0.61 0.00
46_Q 3_R 0.60 0.00
202_K 9_V 0.60 0.00
17_T 4_L 0.59 0.00
60_R 22_A 0.59 0.00
18_V 37_L 0.58 0.00
200_D 24_K 0.58 0.00
136_I 14_G 0.58 0.00
267_S 54_V 0.58 0.00
250_W 44_R 0.58 0.00
10_T 53_L 0.58 0.00
272_A 35_R 0.58 0.00
263_R 32_Q 0.58 0.00
48_R 24_K 0.57 0.00
113_V 6_V 0.57 0.00
36_P 19_Q 0.57 0.00
245_P 8_L 0.57 0.00
233_H 23_L 0.57 0.00
252_W 17_K 0.57 0.00
217_R 13_I 0.56 0.00
138_V 14_G 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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