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OPENSEQ.org
L02 - S05
UniProt: P60405 - Q5SHQ5
Length: 438
Sequences: 1332
Seq/Len: 3.08
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dD 3v2eE 3v2fDContact Map
2j002j00E 2j01D 2j02E 2j03DContact Map
4juw4juwE 4juxDContact Map
4kix4kixC 4kiyE 4kizC 4kj0E 4kj1C 4kj2E 4kj3C 4kj4EContact Map
4kj54kj5C 4kj6E 4kj7C 4kj8E 4kj9C 4kjaE 4kjbC 4kjcEContact Map
3knh3knhE 3kniD 3knjE 3knkDContact Map
3ohc3ohcE 3ohdE 3ohjD 3ohkDContact Map
3uz63uz6H 3uz7H 3uz8D 3uz9DContact Map
3oge3ogeE 3ogyE 3oh5D 3oh7DContact Map
3uyd3uydH 3uyeD 3uyfH 3uygDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
124_P 87_S 0.91 0.00
169_E 13_I 0.85 0.00
3_V 146_A 0.79 0.00
156_A 110_L 0.78 0.00
54_R 147_D 0.78 0.00
132_P 115_V 0.75 0.00
176_R 31_L 0.73 0.00
12_S 86_A 0.72 0.00
24_I 9_K 0.71 0.00
143_H 48_A 0.70 0.00
46_Q 33_V 0.69 0.00
240_A 86_A 0.69 0.00
40_T 155_E 0.69 0.00
253_Q 115_V 0.69 0.00
185_V 56_Q 0.69 0.00
195_A 159_Q 0.68 0.00
187_G 58_A 0.68 0.00
28_E 71_L 0.67 0.00
272_A 79_E 0.67 0.00
265_P 156_A 0.66 0.00
35_K 148_V 0.66 0.00
2_A 14_R 0.66 0.00
240_A 110_L 0.65 0.00
36_P 53_L 0.65 0.00
138_V 117_D 0.64 0.00
80_A 71_L 0.64 0.00
49_I 144_T 0.64 0.00
15_F 143_R 0.64 0.00
95_L 67_V 0.64 0.00
79_V 132_A 0.63 0.00
195_A 8_E 0.63 0.00
58_H 119_L 0.63 0.00
11_P 7_E 0.63 0.00
104_Y 125_S 0.63 0.00
13_R 52_P 0.62 0.00
65_I 80_I 0.62 0.00
34_V 137_E 0.62 0.00
186_H 43_L 0.62 0.00
10_T 144_T 0.62 0.00
59_K 69_V 0.62 0.00
272_A 129_I 0.61 0.00
4_K 56_Q 0.61 0.00
149_P 118_I 0.61 0.00
263_R 16_T 0.60 0.00
17_T 151_L 0.60 0.00
16_M 151_L 0.60 0.00
178_P 127_N 0.60 0.00
215_L 129_I 0.60 0.00
248_S 157_H 0.60 0.00
185_V 138_A 0.60 0.00
25_T 157_H 0.59 0.00
213_R 33_V 0.59 0.00
15_F 4_T 0.59 0.00
5_K 129_I 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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