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OPENSEQ.org
L02 - S14
UniProt: P60405 - Q5SHQ1
Length: 337
Sequences: 1076
Seq/Len: 3.19
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cN 3v2dD 3v2eN 3v2fDContact Map
2j002j00N 2j01D 2j02N 2j03DContact Map
4juw4juwN 4juxDContact Map
4kix4kixC 4kiyN 4kizC 4kj0N 4kj1C 4kj2N 4kj3C 4kj4NContact Map
4kj54kj5C 4kj6N 4kj7C 4kj8N 4kj9C 4kjaN 4kjbC 4kjcNContact Map
3knh3knhN 3kniD 3knjN 3knkDContact Map
3ohc3ohcN 3ohdN 3ohjD 3ohkDContact Map
3uz63uz6Q 3uz7Q 3uz8D 3uz9DContact Map
3u5b3u5cd 3u5eA 3u5gd 3u5iAContact Map
3oge3ogeN 3ogyN 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
255_K 49_H 0.86 0.00
166_Q 59_A 0.83 0.00
8_P 51_G 0.79 0.00
155_L 25_V 0.75 0.00
49_I 34_Y 0.74 0.00
89_S 36_F 0.74 0.00
149_P 59_A 0.73 0.00
162_S 33_V 0.71 0.00
73_V 59_A 0.70 0.00
178_P 38_G 0.70 0.00
15_F 57_R 0.69 0.00
214_W 37_F 0.68 0.00
225_A 31_R 0.68 0.00
243_G 34_Y 0.66 0.00
58_H 39_L 0.66 0.00
241_P 49_H 0.66 0.00
208_K 58_K 0.62 0.00
202_K 34_Y 0.62 0.00
58_H 37_F 0.62 0.00
200_D 8_E 0.61 0.00
115_Q 20_A 0.61 0.00
186_H 18_V 0.60 0.00
73_V 31_R 0.59 0.00
248_S 18_V 0.59 0.00
272_A 34_Y 0.59 0.00
65_I 57_R 0.58 0.00
272_A 22_T 0.58 0.00
135_F 39_L 0.58 0.00
177_L 12_R 0.58 0.00
257_L 26_R 0.58 0.00
182_L 5_A 0.58 0.00
169_E 31_R 0.57 0.00
161_T 32_S 0.57 0.00
15_F 25_V 0.56 0.00
262_R 4_K 0.56 0.00
4_K 47_L 0.56 0.00
45_N 8_E 0.55 0.00
167_G 25_V 0.55 0.00
153_A 20_A 0.55 0.00
89_S 52_Q 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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