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OPENSEQ.org
L02 - L29
UniProt: P60405 - Q5SHP6
Length: 348
Sequences: 944
Seq/Len: 2.78
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoAVContact Map
1vq81vq8AVContact Map
1vqp1vqpAVContact Map
1vqm1vqmAVContact Map
1vql1vqlAVContact Map
1vqk1vqkAVContact Map
1yhq1yhqAVContact Map
1s721s72AVContact Map
1vq91vq9AVContact Map
1vqn1vqnAVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
266_S 32_L 1.02 0.01
201_H 59_R 0.90 0.01
41_G 42_G 0.86 0.01
74_G 59_R 0.83 0.01
68_K 43_Q 0.79 0.00
233_H 33_M 0.72 0.00
252_W 40_S 0.71 0.00
5_K 12_E 0.70 0.00
186_H 28_K 0.70 0.00
148_E 61_L 0.69 0.00
131_L 64_L 0.69 0.00
221_V 64_L 0.68 0.00
115_Q 34_E 0.68 0.00
107_A 64_L 0.67 0.00
11_P 25_V 0.65 0.00
272_A 67_K 0.64 0.00
248_S 16_L 0.64 0.00
163_A 41_I 0.62 0.00
7_K 55_R 0.61 0.00
166_Q 44_L 0.61 0.00
24_I 19_V 0.61 0.00
268_R 68_R 0.60 0.00
248_S 31_E 0.60 0.00
24_I 28_K 0.60 0.00
10_T 41_I 0.59 0.00
248_S 40_S 0.59 0.00
273_R 17_S 0.59 0.00
45_N 51_R 0.59 0.00
144_A 45_S 0.58 0.00
45_N 48_H 0.58 0.00
233_H 41_I 0.58 0.00
145_V 15_K 0.58 0.00
167_G 37_F 0.58 0.00
224_A 34_E 0.58 0.00
3_V 53_L 0.57 0.00
268_R 23_K 0.57 0.00
161_T 19_V 0.57 0.00
173_V 60_L 0.57 0.00
81_A 61_L 0.57 0.00
253_Q 39_A 0.57 0.00
169_E 63_V 0.57 0.00
239_R 26_R 0.57 0.00
16_M 43_Q 0.57 0.00
165_I 57_I 0.56 0.00
168_R 50_I 0.56 0.00
258_K 61_L 0.56 0.00
217_R 55_R 0.56 0.00
58_H 22_E 0.56 0.00
131_L 17_S 0.55 0.00
217_R 34_E 0.55 0.00
22_S 55_R 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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