May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - L22
UniProt: P60405 - Q5SHP3
Length: 389
Sequences: 1458
Seq/Len: 3.78
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoARContact Map
1vq81vq8ARContact Map
1vqp1vqpARContact Map
1vqm1vqmARContact Map
1vql1vqlARContact Map
1vqk1vqkARContact Map
1yhq1yhqARContact Map
1s721s72ARContact Map
1vq91vq9ARContact Map
1vqn1vqnARContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_L 96_I 0.91 0.00
106_I 100_T 0.77 0.00
170_G 70_Y 0.77 0.00
177_L 71_V 0.74 0.00
166_Q 55_A 0.71 0.00
155_L 110_K 0.71 0.00
12_S 18_R 0.69 0.00
119_A 31_E 0.69 0.00
65_I 31_E 0.69 0.00
17_T 39_T 0.68 0.00
177_L 97_K 0.68 0.00
221_V 89_A 0.68 0.00
28_E 73_A 0.67 0.00
162_S 95_I 0.67 0.00
68_K 40_N 0.67 0.00
214_W 6_I 0.67 0.00
268_R 93_A 0.66 0.00
49_I 43_G 0.66 0.00
142_V 24_I 0.65 0.00
36_P 62_H 0.64 0.00
212_S 24_I 0.63 0.00
180_G 83_K 0.62 0.00
254_T 81_A 0.62 0.00
108_P 54_A 0.62 0.00
271_I 62_H 0.62 0.00
10_T 94_D 0.62 0.00
226_M 5_A 0.62 0.00
254_T 19_L 0.61 0.00
98_V 51_L 0.60 0.00
7_K 30_E 0.60 0.00
266_S 87_P 0.59 0.00
12_S 26_G 0.59 0.00
168_R 8_R 0.59 0.00
266_S 70_Y 0.59 0.00
193_V 109_E 0.58 0.00
203_N 19_L 0.58 0.00
254_T 71_V 0.58 0.00
262_R 15_R 0.57 0.00
178_P 9_Y 0.57 0.00
173_V 56_A 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3952 seconds.