May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L02 - L03
UniProt: P60405 - Q5SHN8
Length: 482
Sequences: 1512
Seq/Len: 3.16
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dDE 3v2fDEContact Map
2j002j01DE 2j03DEContact Map
4juw4juxDEContact Map
4kix4kixCD 4kizCD 4kj1CD 4kj3CDContact Map
4kj54kj5CD 4kj7CD 4kj9CD 4kjbCDContact Map
2zjr2zjrABContact Map
4btc4btdDEContact Map
3uyd3uyeDE 3uygDEContact Map
4gd13r8sCD 3r8tCDContact Map
3knh3kniDE 3knkDEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
200_D 31_C 1.00 0.01
202_K 100_E 0.92 0.01
65_I 60_N 0.80 0.01
6_F 157_A 0.80 0.01
271_I 38_T 0.80 0.01
89_S 51_F 0.78 0.01
167_G 188_V 0.78 0.01
115_Q 193_G 0.77 0.01
11_P 31_C 0.77 0.00
217_R 21_V 0.76 0.00
144_A 149_R 0.74 0.00
273_R 193_G 0.73 0.00
7_K 107_T 0.72 0.00
165_I 155_K 0.71 0.00
241_P 124_G 0.71 0.00
60_R 74_P 0.70 0.00
193_V 105_T 0.70 0.00
265_P 159_H 0.69 0.00
177_L 168_M 0.69 0.00
178_P 29_G 0.68 0.00
118_V 192_N 0.67 0.00
96_H 89_D 0.66 0.00
3_V 58_R 0.66 0.00
153_A 149_R 0.66 0.00
206_L 19_R 0.65 0.00
45_N 183_L 0.65 0.00
247_A 131_A 0.64 0.00
117_V 60_N 0.64 0.00
267_S 194_G 0.64 0.00
16_M 193_G 0.64 0.00
11_P 193_G 0.63 0.00
169_E 182_L 0.63 0.00
263_R 184_V 0.63 0.00
93_A 178_E 0.62 0.00
263_R 202_K 0.62 0.00
70_W 86_P 0.61 0.00
173_V 64_K 0.61 0.00
261_K 36_R 0.61 0.00
269_F 87_E 0.61 0.00
31_K 162_A 0.60 0.00
239_R 66_H 0.60 0.00
239_R 62_P 0.60 0.00
4_K 134_I 0.60 0.00
242_R 124_G 0.60 0.00
244_R 145_K 0.60 0.00
171_D 188_V 0.59 0.00
195_A 187_A 0.59 0.00
68_K 57_K 0.59 0.00
141_V 196_V 0.58 0.00
224_A 60_N 0.58 0.00
10_T 16_R 0.58 0.00
89_S 96_F 0.58 0.00
153_A 144_R 0.58 0.00
77_A 9_V 0.58 0.00
103_R 196_V 0.58 0.00
75_I 155_K 0.58 0.00
161_T 179_E 0.58 0.00
203_N 137_H 0.57 0.00
110_G 184_V 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.5731 seconds.