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OPENSEQ.org
L02 - S10
UniProt: P60405 - Q5SHN7
Length: 381
Sequences: 1163
Seq/Len: 3.10
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2dD 3v2eJ 3v2fDContact Map
2j002j00J 2j01D 2j02J 2j03DContact Map
4juw4juwJ 4juxDContact Map
4kix4kixC 4kiyJ 4kizC 4kj0J 4kj1C 4kj2J 4kj3C 4kj4JContact Map
4kj54kj5C 4kj6J 4kj7C 4kj8J 4kj9C 4kjaJ 4kjbC 4kjcJContact Map
3knh3knhJ 3kniD 3knjJ 3knkDContact Map
3ohc3ohcJ 3ohdJ 3ohjD 3ohkDContact Map
3uz63uz6M 3uz7M 3uz8D 3uz9DContact Map
3u5b3u5cU 3u5eA 3u5gU 3u5iAContact Map
3oge3ogeJ 3ogyJ 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
162_S 96_I 0.88 0.00
6_F 91_P 0.82 0.00
242_R 58_D 0.81 0.00
140_T 28_R 0.80 0.00
34_V 46_R 0.78 0.00
12_S 100_T 0.78 0.00
206_L 63_F 0.77 0.00
37_L 13_H 0.75 0.00
233_H 64_E 0.75 0.00
217_R 87_T 0.71 0.00
257_L 55_K 0.70 0.00
142_V 91_P 0.69 0.00
144_A 16_L 0.69 0.00
258_K 53_P 0.68 0.00
36_P 82_I 0.67 0.00
242_R 45_R 0.67 0.00
149_P 81_T 0.66 0.00
126_Q 74_I 0.66 0.00
272_A 45_R 0.65 0.00
205_V 75_I 0.65 0.00
254_T 80_K 0.65 0.00
41_G 69_N 0.65 0.00
221_V 11_F 0.64 0.00
155_L 72_V 0.63 0.00
241_P 22_K 0.63 0.00
54_R 45_R 0.63 0.00
45_N 14_K 0.63 0.00
196_V 6_I 0.62 0.00
177_L 43_R 0.62 0.00
158_A 25_E 0.61 0.00
77_A 92_T 0.61 0.00
224_A 76_N 0.61 0.00
248_S 92_T 0.61 0.00
203_N 79_R 0.61 0.00
110_G 48_T 0.61 0.00
44_N 100_T 0.60 0.00
101_E 12_D 0.60 0.00
245_P 59_S 0.60 0.00
254_T 53_P 0.60 0.00
10_T 91_P 0.60 0.00
3_V 96_I 0.60 0.00
244_R 87_T 0.59 0.00
13_R 10_G 0.59 0.00
242_R 48_T 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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