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OPENSEQ.org
L02 - S12
UniProt: P60405 - Q5SHN3
Length: 408
Sequences: 1168
Seq/Len: 2.92
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dD 3v2eL 3v2fDContact Map
2j002j00L 2j01D 2j02L 2j03DContact Map
4juw4juwL 4juxDContact Map
4kix4kixC 4kiyL 4kizC 4kj0L 4kj1C 4kj2L 4kj3C 4kj4LContact Map
4kj54kj5C 4kj6L 4kj7C 4kj8L 4kj9C 4kjaL 4kjbC 4kjcLContact Map
3ohc3ohcL 3ohdL 3ohjD 3ohkDContact Map
3knh3knhL 3kniD 3knjL 3knkDContact Map
3uz63uz6O 3uz7O 3uz8D 3uz9DContact Map
3u5b3u5cX 3u5eA 3u5gX 3u5iAContact Map
3oge3ogeL 3ogyL 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
74_G 98_V 1.10 0.03
239_R 8_V 1.03 0.02
253_Q 17_K 1.03 0.02
267_S 25_K 1.00 0.02
16_M 21_V 0.99 0.02
178_P 52_V 0.97 0.02
272_A 15_V 0.95 0.02
258_K 82_I 0.94 0.02
161_T 113_S 0.92 0.02
206_L 109_D 0.92 0.02
28_E 13_E 0.90 0.02
115_Q 14_K 0.89 0.01
61_L 101_V 0.89 0.01
161_T 119_T 0.83 0.01
245_P 38_R 0.83 0.01
244_R 82_I 0.83 0.01
161_T 36_V 0.81 0.01
202_K 59_S 0.81 0.01
180_G 78_S 0.80 0.01
275_K 109_D 0.78 0.01
258_K 2_P 0.78 0.01
70_W 108_K 0.77 0.01
233_H 18_K 0.76 0.01
40_T 109_D 0.76 0.01
275_K 14_K 0.76 0.01
165_I 112_K 0.73 0.01
275_K 81_L 0.73 0.01
12_S 36_V 0.72 0.01
4_K 5_N 0.72 0.01
164_Q 105_A 0.72 0.01
245_P 82_I 0.71 0.01
271_I 10_K 0.71 0.01
255_K 65_A 0.71 0.01
54_R 53_A 0.69 0.01
46_Q 98_V 0.69 0.01
133_L 113_S 0.68 0.01
258_K 16_R 0.68 0.01
27_T 119_T 0.67 0.01
170_G 81_L 0.67 0.01
5_K 58_T 0.67 0.01
177_L 30_R 0.67 0.01
117_V 26_G 0.66 0.01
212_S 82_I 0.66 0.01
89_S 30_R 0.66 0.01
31_K 68_P 0.66 0.01
175_L 28_P 0.65 0.01
214_W 102_Y 0.65 0.01
202_K 70_E 0.65 0.01
167_G 35_T 0.65 0.01
224_A 38_R 0.65 0.01
20_D 58_T 0.64 0.01
271_I 13_E 0.64 0.01
269_F 11_G 0.64 0.01
189_C 34_C 0.64 0.01
22_S 109_D 0.63 0.01
166_Q 5_N 0.63 0.01
36_P 27_A 0.63 0.01
38_K 70_E 0.63 0.01
146_E 62_E 0.62 0.01
78_K 113_S 0.62 0.01
177_L 79_V 0.62 0.01
257_L 25_K 0.62 0.01
15_F 81_L 0.62 0.01
247_A 40_V 0.62 0.01
229_V 40_V 0.62 0.01
195_A 81_L 0.62 0.01
44_N 102_Y 0.62 0.01
2_A 58_T 0.62 0.01
244_R 36_V 0.62 0.01
61_L 54_K 0.62 0.01
221_V 70_E 0.61 0.01
4_K 82_I 0.61 0.01
257_L 108_K 0.61 0.01
254_T 111_K 0.61 0.01
242_R 70_E 0.61 0.01
136_I 98_V 0.61 0.01
151_K 82_I 0.61 0.01
154_K 122_P 0.60 0.01
138_V 116_K 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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