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OPENSEQ.org
L02 - S13
UniProt: P60405 - P80377
Length: 402
Sequences: 1395
Seq/Len: 3.50
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dD 3v2eM 3v2fDContact Map
2j002j00M 2j01D 2j02M 2j03DContact Map
4juw4juwM 4juxDContact Map
4kix4kixC 4kiyM 4kizC 4kj0M 4kj1C 4kj2M 4kj3C 4kj4MContact Map
4kj54kj5C 4kj6M 4kj7C 4kj8M 4kj9C 4kjaM 4kjbC 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjD 3ohkDContact Map
3knh3knhM 3kniD 3knjM 3knkDContact Map
3uz63uz6P 3uz7P 3uz8D 3uz9DContact Map
3u5b3u5cS 3u5eA 3u5gS 3u5iAContact Map
3oge3ogeM 3ogyM 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
239_R 119_G 0.88 0.00
255_K 83_D 0.84 0.00
262_R 117_V 0.83 0.00
133_L 105_T 0.79 0.00
49_I 34_L 0.76 0.00
46_Q 9_I 0.76 0.00
27_T 8_E 0.74 0.00
10_T 61_E 0.73 0.00
61_L 119_G 0.73 0.00
6_F 44_R 0.72 0.00
39_K 30_A 0.71 0.00
258_K 114_R 0.69 0.00
158_A 90_L 0.68 0.00
76_P 30_A 0.68 0.00
177_L 105_T 0.68 0.00
22_S 30_A 0.68 0.00
257_L 37_T 0.68 0.00
3_V 11_R 0.67 0.00
58_H 30_A 0.67 0.00
34_V 41_P 0.67 0.00
2_A 58_E 0.67 0.00
214_W 102_R 0.66 0.00
48_R 90_L 0.66 0.00
187_G 18_A 0.66 0.00
9_Y 27_K 0.65 0.00
10_T 62_N 0.65 0.00
81_A 8_E 0.65 0.00
95_L 12_N 0.65 0.00
70_W 33_A 0.65 0.00
46_Q 52_E 0.65 0.00
197_G 23_Y 0.65 0.00
271_I 23_Y 0.65 0.00
130_A 52_E 0.65 0.00
132_P 58_E 0.65 0.00
21_F 114_R 0.65 0.00
24_I 63_T 0.65 0.00
140_T 69_E 0.64 0.00
9_Y 62_N 0.63 0.00
162_S 18_A 0.63 0.00
78_K 30_A 0.62 0.00
78_K 46_K 0.61 0.00
253_Q 2_A 0.61 0.00
151_K 18_A 0.61 0.00
3_V 55_R 0.61 0.00
205_V 98_V 0.61 0.00
65_I 9_I 0.60 0.00
46_Q 55_R 0.60 0.00
16_M 62_N 0.60 0.00
273_R 39_I 0.60 0.00
244_R 90_L 0.60 0.00
166_Q 83_D 0.60 0.00
45_N 9_I 0.60 0.00
61_L 12_N 0.60 0.00
225_A 116_T 0.59 0.00
39_K 113_P 0.59 0.00
118_V 114_R 0.59 0.00
58_H 65_K 0.58 0.00
36_P 119_G 0.58 0.00
253_Q 98_V 0.58 0.00
205_V 60_V 0.58 0.00
41_G 11_R 0.58 0.00
51_V 62_N 0.58 0.00
11_P 102_R 0.58 0.00
265_P 38_G 0.58 0.00
132_P 59_Y 0.57 0.00
178_P 9_I 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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