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OPENSEQ.org
L02 - S11
UniProt: P60405 - P80376
Length: 405
Sequences: 1324
Seq/Len: 3.29
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dD 3v2eK 3v2fDContact Map
2j002j00K 2j01D 2j02K 2j03DContact Map
4juw4juwK 4juxDContact Map
4kix4kixC 4kiyK 4kizC 4kj0K 4kj1C 4kj2K 4kj3C 4kj4KContact Map
4kj54kj5C 4kj6K 4kj7C 4kj8K 4kj9C 4kjaK 4kjbC 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjD 3ohkDContact Map
3knh3knhK 3kniD 3knjK 3knkDContact Map
3uz63uz6N 3uz7N 3uz8D 3uz9DContact Map
3u5b3u5cO 3u5eA 3u5gO 3u5iAContact Map
3oge3ogeK 3ogyK 3oh5D 3oh7DContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
203_N 99_Q 0.93 0.00
271_I 105_V 0.86 0.00
32_S 21_I 0.86 0.00
93_A 92_E 0.82 0.00
168_R 32_I 0.79 0.00
6_F 1_M 0.77 0.00
4_K 7_K 0.77 0.00
244_R 106_K 0.76 0.00
92_I 103_L 0.75 0.00
15_F 8_K 0.75 0.00
193_V 4_K 0.75 0.00
54_R 3_K 0.75 0.00
151_K 97_A 0.74 0.00
20_D 109_V 0.74 0.00
71_D 45_G 0.72 0.00
272_A 30_V 0.72 0.00
37_L 1_M 0.72 0.00
177_L 22_H 0.71 0.00
9_Y 93_Q 0.70 0.00
89_S 69_A 0.70 0.00
254_T 122_K 0.70 0.00
225_A 23_A 0.70 0.00
253_Q 10_V 0.70 0.00
177_L 81_D 0.70 0.00
144_A 100_A 0.69 0.00
242_R 93_Q 0.69 0.00
220_H 40_I 0.68 0.00
255_K 93_Q 0.68 0.00
275_K 6_S 0.68 0.00
53_F 56_G 0.68 0.00
266_S 21_I 0.68 0.00
15_F 100_A 0.67 0.00
7_K 85_R 0.66 0.00
155_L 9_K 0.66 0.00
51_V 39_P 0.66 0.00
272_A 89_A 0.65 0.00
159_A 80_V 0.65 0.00
253_Q 22_H 0.65 0.00
130_A 56_G 0.64 0.00
267_S 24_S 0.64 0.00
145_V 105_V 0.64 0.00
131_L 69_A 0.63 0.00
174_I 45_G 0.63 0.00
176_R 9_K 0.63 0.00
182_L 6_S 0.63 0.00
275_K 2_A 0.63 0.00
263_R 100_A 0.62 0.00
40_T 24_S 0.62 0.00
202_K 9_K 0.62 0.00
103_R 24_S 0.62 0.00
90_A 82_V 0.62 0.00
105_I 21_I 0.62 0.00
101_E 31_T 0.62 0.00
117_V 4_K 0.62 0.00
172_Y 59_Y 0.62 0.00
60_R 8_K 0.61 0.00
261_K 30_V 0.61 0.00
275_K 5_P 0.61 0.00
162_S 67_D 0.61 0.00
15_F 9_K 0.61 0.00
248_S 2_A 0.61 0.00
112_Q 45_G 0.60 0.00
124_P 75_Y 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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