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OPENSEQ.org

L02 - S09
UniProt: P60405 - P80374
Length: 404
Sequences: 1441
Seq/Len: 3.59
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dD 3v2eI 3v2fDContact Map
2j002j00I 2j01D 2j02I 2j03DContact Map
4juw4juwI 4juxDContact Map
4kix4kixC 4kiyI 4kizC 4kj0I 4kj1C 4kj2I 4kj3C 4kj4IContact Map
4kj54kj5C 4kj6I 4kj7C 4kj8I 4kj9C 4kjaI 4kjbC 4kjcIContact Map
3knh3knhI 3kniD 3knjI 3knkDContact Map
3ohc3ohcI 3ohdI 3ohjD 3ohkDContact Map
3uz63uz6L 3uz7L 3uz8D 3uz9DContact Map
3u5b3u5cQ 3u5eA 3u5gQ 3u5iAContact Map
3oge3ogeI 3ogyI 3oh5D 3oh7DContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_P 77_I 0.89 0.00
242_R 123_P 0.86 0.00
233_H 123_P 0.82 0.00
239_R 63_I 0.76 0.00
239_R 121_R 0.74 0.00
54_R 45_A 0.72 0.00
126_Q 26_V 0.71 0.00
15_F 28_V 0.70 0.00
37_L 98_P 0.68 0.00
34_V 3_Q 0.68 0.00
165_I 14_V 0.68 0.00
241_P 122_A 0.68 0.00
253_Q 71_S 0.67 0.00
28_E 54_D 0.67 0.00
195_A 118_K 0.67 0.00
74_G 94_A 0.66 0.00
145_V 58_H 0.66 0.00
255_K 122_A 0.65 0.00
60_R 49_P 0.65 0.00
77_A 14_V 0.64 0.00
20_D 52_A 0.64 0.00
140_T 97_K 0.64 0.00
140_T 85_L 0.63 0.00
272_A 121_R 0.63 0.00
31_K 114_Y 0.63 0.00
130_A 77_I 0.63 0.00
196_V 72_G 0.63 0.00
36_P 58_H 0.62 0.00
36_P 123_P 0.62 0.00
225_A 108_V 0.62 0.00
11_P 35_E 0.62 0.00
212_S 17_V 0.62 0.00
199_A 98_P 0.61 0.00
215_L 101_F 0.61 0.00
255_K 123_P 0.61 0.00
239_R 41_V 0.60 0.00
186_H 108_V 0.60 0.00
39_K 31_Q 0.60 0.00
41_G 37_F 0.60 0.00
224_A 70_K 0.60 0.00
134_R 28_V 0.60 0.00
24_I 19_L 0.60 0.00
121_P 28_V 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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